FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6560, 165 aa 1>>>pF1KE6560 165 - 165 aa - 165 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7937+/-0.000323; mu= 14.6751+/- 0.020 mean_var=57.9398+/-11.389, 0's: 0 Z-trim(115.4): 5 B-trim: 196 in 2/49 Lambda= 0.168495 statistics sampled from 25794 (25798) to 25794 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.302), width: 16 Scan time: 4.120 The best scores are: opt bits E(85289) NP_001171273 (OMIM: 607954) ran guanine nucleotide ( 165) 1105 276.4 1.5e-74 NP_001171272 (OMIM: 607954) ran guanine nucleotide ( 146) 795 201.0 6.4e-52 NP_057576 (OMIM: 607954) ran guanine nucleotide re ( 186) 796 201.3 6.6e-52 NP_001317056 (OMIM: 607954) ran guanine nucleotide ( 118) 790 199.7 1.3e-51 >>NP_001171273 (OMIM: 607954) ran guanine nucleotide rel (165 aa) initn: 1105 init1: 1105 opt: 1105 Z-score: 1459.6 bits: 276.4 E(85289): 1.5e-74 Smith-Waterman score: 1105; 100.0% identity (100.0% similar) in 165 aa overlap (1-165:1-165) 10 20 30 40 50 60 pF1KE6 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVRA 70 80 90 100 110 120 130 140 150 160 pF1KE6 RECVMSWKGGSGDAEIQVSILTLIPLGSKGRDTSSGLAEAAPVPD ::::::::::::::::::::::::::::::::::::::::::::: NP_001 RECVMSWKGGSGDAEIQVSILTLIPLGSKGRDTSSGLAEAAPVPD 130 140 150 160 >>NP_001171272 (OMIM: 607954) ran guanine nucleotide rel (146 aa) initn: 795 init1: 795 opt: 795 Z-score: 1053.1 bits: 201.0 E(85289): 6.4e-52 Smith-Waterman score: 795; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118) 10 20 30 40 50 60 pF1KE6 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVAK 70 80 90 100 110 120 130 140 150 160 pF1KE6 RECVMSWKGGSGDAEIQVSILTLIPLGSKGRDTSSGLAEAAPVPD NP_001 DVTLHQALLRLPQYQTDLLLTFNQPP 130 140 >>NP_057576 (OMIM: 607954) ran guanine nucleotide releas (186 aa) initn: 814 init1: 795 opt: 796 Z-score: 1052.9 bits: 201.3 E(85289): 6.6e-52 Smith-Waterman score: 796; 76.2% identity (85.4% similar) in 164 aa overlap (1-164:1-162) 10 20 30 40 50 60 pF1KE6 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : NP_057 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQV-A 70 80 90 100 110 130 140 150 160 pF1KE6 RECVMSWKGGSGDAEIQVSILTLIPLGSKGRDTSSGLAEAAPVPD .. .. .. . :...: . .: : . .:.: NP_057 KDVTLH-QALLRLPQYQTDLLLTFNQPPPDNRSSLGPENLSPAPWSLGDFEQLVTSLTLH 120 130 140 150 160 170 NP_057 DPNIFGPQ 180 >>NP_001317056 (OMIM: 607954) ran guanine nucleotide rel (118 aa) initn: 790 init1: 790 opt: 790 Z-score: 1047.9 bits: 199.7 E(85289): 1.3e-51 Smith-Waterman score: 790; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117) 10 20 30 40 50 60 pF1KE6 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVRA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQP 70 80 90 100 110 130 140 150 160 pF1KE6 RECVMSWKGGSGDAEIQVSILTLIPLGSKGRDTSSGLAEAAPVPD 165 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:24:59 2016 done: Tue Nov 8 14:24:59 2016 Total Scan time: 4.120 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]