FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6560, 165 aa 1>>>pF1KE6560 165 - 165 aa - 165 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8317+/-0.00071; mu= 14.5615+/- 0.043 mean_var=58.9779+/-11.638, 0's: 0 Z-trim(108.8): 5 B-trim: 18 in 1/50 Lambda= 0.167005 statistics sampled from 10461 (10465) to 10461 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.321), width: 16 Scan time: 1.780 The best scores are: opt bits E(32554) CCDS54087.1 RANGRF gene_id:29098|Hs108|chr17 ( 165) 1105 274.0 2.9e-74 CCDS54086.1 RANGRF gene_id:29098|Hs108|chr17 ( 146) 795 199.3 8.1e-52 CCDS11137.1 RANGRF gene_id:29098|Hs108|chr17 ( 186) 796 199.6 8.4e-52 CCDS82066.1 RANGRF gene_id:29098|Hs108|chr17 ( 118) 790 198.0 1.6e-51 >>CCDS54087.1 RANGRF gene_id:29098|Hs108|chr17 (165 aa) initn: 1105 init1: 1105 opt: 1105 Z-score: 1446.6 bits: 274.0 E(32554): 2.9e-74 Smith-Waterman score: 1105; 100.0% identity (100.0% similar) in 165 aa overlap (1-165:1-165) 10 20 30 40 50 60 pF1KE6 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVRA 70 80 90 100 110 120 130 140 150 160 pF1KE6 RECVMSWKGGSGDAEIQVSILTLIPLGSKGRDTSSGLAEAAPVPD ::::::::::::::::::::::::::::::::::::::::::::: CCDS54 RECVMSWKGGSGDAEIQVSILTLIPLGSKGRDTSSGLAEAAPVPD 130 140 150 160 >>CCDS54086.1 RANGRF gene_id:29098|Hs108|chr17 (146 aa) initn: 795 init1: 795 opt: 795 Z-score: 1043.7 bits: 199.3 E(32554): 8.1e-52 Smith-Waterman score: 795; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118) 10 20 30 40 50 60 pF1KE6 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVAK 70 80 90 100 110 120 130 140 150 160 pF1KE6 RECVMSWKGGSGDAEIQVSILTLIPLGSKGRDTSSGLAEAAPVPD CCDS54 DVTLHQALLRLPQYQTDLLLTFNQPP 130 140 >>CCDS11137.1 RANGRF gene_id:29098|Hs108|chr17 (186 aa) initn: 814 init1: 795 opt: 796 Z-score: 1043.5 bits: 199.6 E(32554): 8.4e-52 Smith-Waterman score: 796; 76.2% identity (85.4% similar) in 164 aa overlap (1-164:1-162) 10 20 30 40 50 60 pF1KE6 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : CCDS11 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQV-A 70 80 90 100 110 130 140 150 160 pF1KE6 RECVMSWKGGSGDAEIQVSILTLIPLGSKGRDTSSGLAEAAPVPD .. .. .. . :...: . .: : . .:.: CCDS11 KDVTLH-QALLRLPQYQTDLLLTFNQPPPDNRSSLGPENLSPAPWSLGDFEQLVTSLTLH 120 130 140 150 160 170 CCDS11 DPNIFGPQ 180 >>CCDS82066.1 RANGRF gene_id:29098|Hs108|chr17 (118 aa) initn: 790 init1: 790 opt: 790 Z-score: 1038.6 bits: 198.0 E(32554): 1.6e-51 Smith-Waterman score: 790; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117) 10 20 30 40 50 60 pF1KE6 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVRA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQP 70 80 90 100 110 130 140 150 160 pF1KE6 RECVMSWKGGSGDAEIQVSILTLIPLGSKGRDTSSGLAEAAPVPD 165 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:24:58 2016 done: Tue Nov 8 14:24:58 2016 Total Scan time: 1.780 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]