FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2749, 213 aa
  1>>>pF1KE2749     213 - 213 aa - 213 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7378+/-0.000643; mu= 17.8269+/- 0.039
 mean_var=73.8261+/-15.252, 0's: 0 Z-trim(112.1): 20  B-trim: 716 in 1/52
 Lambda= 0.149269
 statistics sampled from 13090 (13103) to 13090 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.392), width:  16
 Scan time:  1.040

The best scores are:                                      opt bits E(33420)
CCDS12226.1 P2RY11 gene_id:5032|Hs109|chr19        ( 374) 1455 321.9 3.3e-88
CCDS42498.1 P2RY11 gene_id:692312|Hs109|chr19      ( 794) 1455 322.2 5.6e-88


>>CCDS12226.1 P2RY11 gene_id:5032|Hs109|chr19             (374 aa)
 initn: 1455 init1: 1455 opt: 1455  Z-score: 1697.3  bits: 321.9 E(33420): 3.3e-88
Smith-Waterman score: 1455; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:162-374)

                                             10        20        30
pF1KE2                               MPTLSFSHLKRPQQGAGNCSVARPEACIKC
                                     ::::::::::::::::::::::::::::::
CCDS12 VHPFFARSHLRPKHAWAVSAAGWVLAALLAMPTLSFSHLKRPQQGAGNCSVARPEACIKC
             140       150       160       170       180       190 

               40        50        60        70        80        90
pF1KE2 LGTADHGLAAYRAYSLVLAGLGCGLPLLLTLAAYGALGRAVLRSPGMTVAEKLRVAALVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LGTADHGLAAYRAYSLVLAGLGCGLPLLLTLAAYGALGRAVLRSPGMTVAEKLRVAALVA
             200       210       220       230       240       250 

              100       110       120       130       140       150
pF1KE2 SGVALYASSYVPYHIMRVLNVDARRRWSTRCPSFADIAQATAALELGPYVGYQVMRGLMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SGVALYASSYVPYHIMRVLNVDARRRWSTRCPSFADIAQATAALELGPYVGYQVMRGLMP
             260       270       280       290       300       310 

              160       170       180       190       200       210
pF1KE2 LAFCVHPLLYMAAVPSLGCCCRHCPGYRDSWNPEDAKSTGQALPLNATAAPKPSEPQSRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LAFCVHPLLYMAAVPSLGCCCRHCPGYRDSWNPEDAKSTGQALPLNATAAPKPSEPQSRE
             320       330       340       350       360       370 

          
pF1KE2 LSQ
       :::
CCDS12 LSQ
          

>>CCDS42498.1 P2RY11 gene_id:692312|Hs109|chr19           (794 aa)
 initn: 1455 init1: 1455 opt: 1455  Z-score: 1693.1  bits: 322.2 E(33420): 5.6e-88
Smith-Waterman score: 1455; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:582-794)

                                             10        20        30
pF1KE2                               MPTLSFSHLKRPQQGAGNCSVARPEACIKC
                                     ::::::::::::::::::::::::::::::
CCDS42 VHPFFARSHLRPKHAWAVSAAGWVLAALLAMPTLSFSHLKRPQQGAGNCSVARPEACIKC
             560       570       580       590       600       610 

               40        50        60        70        80        90
pF1KE2 LGTADHGLAAYRAYSLVLAGLGCGLPLLLTLAAYGALGRAVLRSPGMTVAEKLRVAALVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LGTADHGLAAYRAYSLVLAGLGCGLPLLLTLAAYGALGRAVLRSPGMTVAEKLRVAALVA
             620       630       640       650       660       670 

              100       110       120       130       140       150
pF1KE2 SGVALYASSYVPYHIMRVLNVDARRRWSTRCPSFADIAQATAALELGPYVGYQVMRGLMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SGVALYASSYVPYHIMRVLNVDARRRWSTRCPSFADIAQATAALELGPYVGYQVMRGLMP
             680       690       700       710       720       730 

              160       170       180       190       200       210
pF1KE2 LAFCVHPLLYMAAVPSLGCCCRHCPGYRDSWNPEDAKSTGQALPLNATAAPKPSEPQSRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LAFCVHPLLYMAAVPSLGCCCRHCPGYRDSWNPEDAKSTGQALPLNATAAPKPSEPQSRE
             740       750       760       770       780       790 

          
pF1KE2 LSQ
       :::
CCDS42 LSQ
          




213 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Jun 19 14:27:14 2019 done: Wed Jun 19 14:27:14 2019
 Total Scan time:  1.040 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]