FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5277, 220 aa 1>>>pF1KE5277 220 - 220 aa - 220 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4827+/-0.0003; mu= 13.4976+/- 0.019 mean_var=72.2352+/-14.355, 0's: 0 Z-trim(117.9): 8 B-trim: 1117 in 1/57 Lambda= 0.150904 statistics sampled from 30240 (30248) to 30240 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.355), width: 16 Scan time: 5.690 The best scores are: opt bits E(85289) XP_011514712 (OMIM: 611478) PREDICTED: 7SK snRNA m ( 220) 1491 333.1 2.2e-91 NP_001181921 (OMIM: 611478) 7SK snRNA methylphosph ( 220) 1491 333.1 2.2e-91 NP_001181919 (OMIM: 611478) 7SK snRNA methylphosph ( 220) 1491 333.1 2.2e-91 NP_001181920 (OMIM: 611478) 7SK snRNA methylphosph ( 220) 1491 333.1 2.2e-91 NP_062552 (OMIM: 611478) 7SK snRNA methylphosphate ( 689) 1491 333.4 5.6e-91 >>XP_011514712 (OMIM: 611478) PREDICTED: 7SK snRNA methy (220 aa) initn: 1491 init1: 1491 opt: 1491 Z-score: 1761.7 bits: 333.1 E(85289): 2.2e-91 Smith-Waterman score: 1491; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220) 10 20 30 40 50 60 pF1KE5 MVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 SRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 NWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSS 130 140 150 160 170 180 190 200 210 220 pF1KE5 YLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHKARSPSH :::::::::::::::::::::::::::::::::::::::: XP_011 YLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHKARSPSH 190 200 210 220 >>NP_001181921 (OMIM: 611478) 7SK snRNA methylphosphate (220 aa) initn: 1491 init1: 1491 opt: 1491 Z-score: 1761.7 bits: 333.1 E(85289): 2.2e-91 Smith-Waterman score: 1491; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220) 10 20 30 40 50 60 pF1KE5 MVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 SRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 NWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSS 130 140 150 160 170 180 190 200 210 220 pF1KE5 YLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHKARSPSH :::::::::::::::::::::::::::::::::::::::: NP_001 YLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHKARSPSH 190 200 210 220 >>NP_001181919 (OMIM: 611478) 7SK snRNA methylphosphate (220 aa) initn: 1491 init1: 1491 opt: 1491 Z-score: 1761.7 bits: 333.1 E(85289): 2.2e-91 Smith-Waterman score: 1491; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220) 10 20 30 40 50 60 pF1KE5 MVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 SRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 NWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSS 130 140 150 160 170 180 190 200 210 220 pF1KE5 YLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHKARSPSH :::::::::::::::::::::::::::::::::::::::: NP_001 YLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHKARSPSH 190 200 210 220 >>NP_001181920 (OMIM: 611478) 7SK snRNA methylphosphate (220 aa) initn: 1491 init1: 1491 opt: 1491 Z-score: 1761.7 bits: 333.1 E(85289): 2.2e-91 Smith-Waterman score: 1491; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220) 10 20 30 40 50 60 pF1KE5 MVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 SRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 NWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSS 130 140 150 160 170 180 190 200 210 220 pF1KE5 YLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHKARSPSH :::::::::::::::::::::::::::::::::::::::: NP_001 YLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHKARSPSH 190 200 210 220 >>NP_062552 (OMIM: 611478) 7SK snRNA methylphosphate cap (689 aa) initn: 1491 init1: 1491 opt: 1491 Z-score: 1754.3 bits: 333.4 E(85289): 5.6e-91 Smith-Waterman score: 1491; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:470-689) 10 20 30 pF1KE5 MVGLDIDSRLIHSARQNIRHYLSEELRLPP :::::::::::::::::::::::::::::: NP_062 EWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPP 440 450 460 470 480 490 40 50 60 70 80 90 pF1KE5 QTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_062 QTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGN 500 510 520 530 540 550 100 110 120 130 140 150 pF1KE5 YVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_062 YVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQP 560 570 580 590 600 610 160 170 180 190 200 210 pF1KE5 WSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVATPHNTSKGFQRPVY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_062 WSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVATPHNTSKGFQRPVY 620 630 640 650 660 670 220 pF1KE5 LFHKARSPSH :::::::::: NP_062 LFHKARSPSH 680 220 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 07:27:13 2016 done: Tue Nov 8 07:27:14 2016 Total Scan time: 5.690 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]