FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5277, 220 aa 1>>>pF1KE5277 220 - 220 aa - 220 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4315+/-0.000701; mu= 13.7763+/- 0.042 mean_var=73.8061+/-14.237, 0's: 0 Z-trim(110.8): 11 B-trim: 0 in 0/52 Lambda= 0.149289 statistics sampled from 11869 (11876) to 11869 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.365), width: 16 Scan time: 2.010 The best scores are: opt bits E(32554) CCDS55136.1 MEPCE gene_id:56257|Hs108|chr7 ( 220) 1491 329.7 8.8e-91 CCDS5693.1 MEPCE gene_id:56257|Hs108|chr7 ( 689) 1491 330.0 2.2e-90 >>CCDS55136.1 MEPCE gene_id:56257|Hs108|chr7 (220 aa) initn: 1491 init1: 1491 opt: 1491 Z-score: 1743.3 bits: 329.7 E(32554): 8.8e-91 Smith-Waterman score: 1491; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220) 10 20 30 40 50 60 pF1KE5 MVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 MVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 SRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 SRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 NWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 NWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSS 130 140 150 160 170 180 190 200 210 220 pF1KE5 YLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHKARSPSH :::::::::::::::::::::::::::::::::::::::: CCDS55 YLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHKARSPSH 190 200 210 220 >>CCDS5693.1 MEPCE gene_id:56257|Hs108|chr7 (689 aa) initn: 1491 init1: 1491 opt: 1491 Z-score: 1736.0 bits: 330.0 E(32554): 2.2e-90 Smith-Waterman score: 1491; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:470-689) 10 20 30 pF1KE5 MVGLDIDSRLIHSARQNIRHYLSEELRLPP :::::::::::::::::::::::::::::: CCDS56 EWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPP 440 450 460 470 480 490 40 50 60 70 80 90 pF1KE5 QTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 QTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGN 500 510 520 530 540 550 100 110 120 130 140 150 pF1KE5 YVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 YVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQP 560 570 580 590 600 610 160 170 180 190 200 210 pF1KE5 WSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVATPHNTSKGFQRPVY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 WSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVATPHNTSKGFQRPVY 620 630 640 650 660 670 220 pF1KE5 LFHKARSPSH :::::::::: CCDS56 LFHKARSPSH 680 220 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 07:27:12 2016 done: Tue Nov 8 07:27:13 2016 Total Scan time: 2.010 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]