FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2574, 441 aa 1>>>pF1KE2574 441 - 441 aa - 441 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4472+/-0.000854; mu= 17.3966+/- 0.051 mean_var=72.5852+/-14.879, 0's: 0 Z-trim(107.3): 17 B-trim: 0 in 0/49 Lambda= 0.150539 statistics sampled from 9475 (9486) to 9475 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.667), E-opt: 0.2 (0.291), width: 16 Scan time: 3.060 The best scores are: opt bits E(32554) CCDS9698.1 L2HGDH gene_id:79944|Hs108|chr14 ( 463) 2686 592.6 2.8e-169 >>CCDS9698.1 L2HGDH gene_id:79944|Hs108|chr14 (463 aa) initn: 2678 init1: 2678 opt: 2686 Z-score: 3152.6 bits: 592.6 E(32554): 2.8e-169 Smith-Waterman score: 2686; 94.6% identity (96.2% similar) in 426 aa overlap (1-426:1-421) 10 20 30 40 50 60 pF1KE2 MVPALRYLVGACGRARGRFAGGSPGACGFASGRPRPLCGGSRSASTSSFDIVIVGGGIVG ::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::: CCDS96 MVPALRYLVGACGRARGLFAGGSPGACGFASGRPRPLCGGSRSASTSSFDIVIVGGGIVG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 LASARALILRHPSLSIGVLEKEKDLAVHQTGHNSGVIHSGIYYKPESLKAKLCVQGAALL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 LASARALILRHPSLSIGVLEKEKDLAVHQTGHNSGVIHSGIYYKPESLKAKLCVQGAALL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 YEYCQQKGISYKQCGKLIVAVEQEEIPRLQALYEKGLQNGVPGLRLIQQEDIKKKEPYCR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 YEYCQQKGISYKQCGKLIVAVEQEEIPRLQALYEKGLQNGVPGLRLIQQEDIKKKEPYCR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 GLMAIDCPHTGIVDYRQVALSFAQDFQEAGGSVLTNFEVKGIEMAKESPSRSIDGMQYPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 GLMAIDCPHTGIVDYRQVALSFAQDFQEAGGSVLTNFEVKGIEMAKESPSRSIDGMQYPI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 VIKNTKGEEIRCQYVVTCAGLYSDRISELSGCTPDPRIVPFRGDYLLLKPEKCYLVKGNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 VIKNTKGEEIRCQYVVTCAGLYSDRISELSGCTPDPRIVPFRGDYLLLKPEKCYLVKGNI 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 YPVPDSRFPFLGVHFTPRMDGSIWLGPNAVLAFKREGYRPFDFSATDVMDIIINSGLIKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 YPVPDSRFPFLGVHFTPRMDGSIWLGPNAVLAFKREGYRPFDFSATDVMDIIINSGLIKL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 ASQNFSYGVTEMYKACFLGATVKYLQKFIPEITISDILRQVAVRGPSWLWQQPMKVSDNN ::::::::::::::::::::::::::::::::::::::: ::. . : . . : CCDS96 ASQNFSYGVTEMYKACFLGATVKYLQKFIPEITISDILR-----GPAGVRAQALDRDGNL 370 380 390 400 410 430 440 pF1KE2 IYCFLWRCFALLLTGSTCSFK . :.. CCDS96 VEDFVFDAGVGDIGNRILHVRNAPSPAATSSIAISGMIADEVQQRFEL 420 430 440 450 460 441 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 19:03:38 2016 done: Fri Nov 4 19:03:39 2016 Total Scan time: 3.060 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]