FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6541, 91 aa 1>>>pF1KE6541 91 - 91 aa - 91 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9593+/-0.000881; mu= 10.3384+/- 0.053 mean_var=50.9615+/-10.369, 0's: 0 Z-trim(103.8): 15 B-trim: 0 in 0/50 Lambda= 0.179661 statistics sampled from 7570 (7575) to 7570 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.613), E-opt: 0.2 (0.233), width: 16 Scan time: 0.970 The best scores are: opt bits E(32554) CCDS54809.1 GYPB gene_id:2994|Hs108|chr4 ( 91) 537 146.7 1.9e-36 CCDS47138.1 GYPE gene_id:2996|Hs108|chr4 ( 78) 276 79.0 3.9e-16 CCDS77965.1 GYPA gene_id:2993|Hs108|chr4 ( 137) 254 73.4 3.3e-14 CCDS34069.1 GYPA gene_id:2993|Hs108|chr4 ( 150) 254 73.4 3.6e-14 CCDS82959.1 GYPA gene_id:2993|Hs108|chr4 ( 117) 237 68.9 6.1e-13 >>CCDS54809.1 GYPB gene_id:2994|Hs108|chr4 (91 aa) initn: 537 init1: 537 opt: 537 Z-score: 767.8 bits: 146.7 E(32554): 1.9e-36 Smith-Waterman score: 537; 100.0% identity (100.0% similar) in 91 aa overlap (1-91:1-91) 10 20 30 40 50 60 pF1KE6 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP 10 20 30 40 50 60 70 80 90 pF1KE6 VVIILIILCVMAGIIGTILLISYSIRRLIKA ::::::::::::::::::::::::::::::: CCDS54 VVIILIILCVMAGIIGTILLISYSIRRLIKA 70 80 90 >>CCDS47138.1 GYPE gene_id:2996|Hs108|chr4 (78 aa) initn: 298 init1: 237 opt: 276 Z-score: 403.2 bits: 79.0 E(32554): 3.9e-16 Smith-Waterman score: 276; 65.1% identity (76.7% similar) in 86 aa overlap (1-86:1-78) 10 20 30 40 50 60 pF1KE6 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP :::::::::::: :::::: ::: :::::::::::::::::::::: : :.. .. CCDS47 MYGKIIFVLLLSGIVSISASSTTGVAMHTSTSSSVTKSYISSQTNGIT--LINWWA---- 10 20 30 40 50 70 80 90 pF1KE6 VVIILIILCVMAGIIGTILLISYSIRRLIKA . .:. :: ..: :.:::: :: CCDS47 --MARVIFEVMLVVVGMIILISYCIR 60 70 >>CCDS77965.1 GYPA gene_id:2993|Hs108|chr4 (137 aa) initn: 372 init1: 254 opt: 254 Z-score: 368.5 bits: 73.4 E(32554): 3.3e-14 Smith-Waterman score: 346; 67.0% identity (75.5% similar) in 106 aa overlap (1-90:1-106) 10 20 30 40 pF1KE6 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNG-------------- ::::::::::::::::::::::::::::::::::::::::::::: CCDS77 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH 10 20 30 40 50 60 50 60 70 80 90 pF1KE6 ETGQLVHRFTVPAP--VVIILIILCVMAGIIGTILLISYSIRRLIKA :.... : . : . : :::. ::::.:::::::::.:::::: CCDS77 EVSEISVRTVYPPEEETEITLIIFGVMAGVIGTILLISYGIRRLIKKSPSDVKPLPSPDT 70 80 90 100 110 120 CCDS77 DVPLSSVEIENPETSDQ 130 >>CCDS34069.1 GYPA gene_id:2993|Hs108|chr4 (150 aa) initn: 374 init1: 254 opt: 254 Z-score: 367.9 bits: 73.4 E(32554): 3.6e-14 Smith-Waterman score: 343; 61.5% identity (66.4% similar) in 122 aa overlap (1-90:1-119) 10 20 30 40 pF1KE6 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTN--------------- ::::::::::::::::::::::::::::::::::::::::::::: CCDS34 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNDTHKRDTYAATPRAH 10 20 30 40 50 60 50 60 70 80 pF1KE6 -----------------GETGQLVHRFTVPAPVVIILIILCVMAGIIGTILLISYSIRRL :: ::.:.:. : : :::. ::::.:::::::::.:::: CCDS34 EVSEISVRTVYPPEEETGERVQLAHHFSEPE---ITLIIFGVMAGVIGTILLISYGIRRL 70 80 90 100 110 90 pF1KE6 IKA :: CCDS34 IKKSPSDVKPLPSPDTDVPLSSVEIENPETSDQ 120 130 140 150 >>CCDS82959.1 GYPA gene_id:2993|Hs108|chr4 (117 aa) initn: 194 init1: 134 opt: 237 Z-score: 345.8 bits: 68.9 E(32554): 6.1e-13 Smith-Waterman score: 237; 53.3% identity (70.0% similar) in 90 aa overlap (1-90:1-86) 10 20 30 40 50 60 pF1KE6 MYGKIIFVLLLSEIVSISALSTTEVAMHTSTSSSVTKSYISSQTNGETGQLVHRFTVPAP ::::::::::::. . .. ..: : : . :: : . .:: ::.:.:. : CCDS82 MYGKIIFVLLLSDTHKRDTYAATPRA-HEVSEISVRTVYPPEEETGERVQLAHHFSEPE- 10 20 30 40 50 70 80 90 pF1KE6 VVIILIILCVMAGIIGTILLISYSIRRLIKA : :::. ::::.:::::::::.:::::: CCDS82 --ITLIIFGVMAGVIGTILLISYGIRRLIKKSPSDVKPLPSPDTDVPLSSVEIENPETSD 60 70 80 90 100 110 91 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:14:56 2016 done: Tue Nov 8 14:14:56 2016 Total Scan time: 0.970 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]