(Circular) (Six-base) MAPSORT of: pFN21AE6666.seq Check: 9715 from: 1 to: 5575 pFN21AE6666 5575 bp With 182 enzymes: SgfI * March 18, 2015 14:53 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2326 2326 Size: 5575 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 2639 3385 278 Size: 53 83 186 936 1103 746 2468 Fragments arranged by size: 2468 1103 936 746 186 83 53 AccI GT'mk_AC Cuts at: 1937 2918 1937 Size: 981 4594 Acc65I G'GTAC_C Cuts at: 2481 2896 2481 Size: 415 5160 AclI AA'CG_TT Cuts at: 1563 3702 4075 1563 Size: 2139 373 3063 Fragments arranged by size: 3063 2139 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3638 5022 5290 1632 Size: 2006 1384 268 1917 Fragments arranged by size: 2006 1917 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5378 AflIII A'CryG_T Cuts at: 1203 4474 5451 1203 Size: 3271 977 1327 Fragments arranged by size: 3271 1327 977 AgeI A'CCGG_T Cuts at: 4406 4406 Size: 5575 AhdI GACnn_n'nnGTC Cuts at: 4304 4304 Size: 5575 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5575 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5575 AlwNI CAG_nnn'CTG Cuts at: 3318 4890 3318 Size: 1572 4003 ApaLI G'TGCA_C Cuts at: 3632 4788 3632 Size: 1156 4419 ApoI r'AATT_y Cuts at: 1493 2525 2732 2884 3110 3262 5371 1493 Size: 1032 207 152 226 152 2109 1697 Fragments arranged by size: 2109 1697 1032 226 207 152 152 AseI AT'TA_AT Cuts at: 160 1032 2414 4129 160 Size: 872 1382 1715 1606 Fragments arranged by size: 1715 1606 1382 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5575 AvaI C'yCGr_G Cuts at: 1870 1943 2900 1870 Size: 73 957 4545 Fragments arranged by size: 4545 957 73 BamHI G'GATC_C Cuts at: 2861 2905 3272 2861 Size: 44 367 5164 Fragments arranged by size: 5164 367 44 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2440 2481 2896 4351 618 Size: 325 217 627 653 41 415 1455 1842 Fragments arranged by size: 1842 1455 653 627 415 325 217 41 BanII G_rGCy'C Cuts at: 1391 2239 2894 1391 Size: 848 655 4072 Fragments arranged by size: 4072 848 655 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4604 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3766 3800 1903 Size: 34 1829 34 3678 Fragments arranged by size: 3678 1829 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3467 4677 3467 Size: 1210 4365 BclI T'GATC_A Cuts at: 1548 2173 1548 Size: 625 4950 BfrBI ATG'CAT Cuts at: 2131 2131 Size: 5575 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4186 136 Size: 107 122 71 631 605 2514 1525 Fragments arranged by size: 2514 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 2755 5570 2755 Size: 2815 2760 BlpI GC'TnA_GC Cuts at: 2992 2992 Size: 5575 Bme1580I G_kGCm'C Cuts at: 1790 2847 3636 4792 1790 Size: 1057 789 1156 2573 Fragments arranged by size: 2573 1156 1057 789 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5575 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2242 3306 4264 Size: 416 53 83 399 24 825 1064 958 Cuts at: 4264 442 Size: 1753 Fragments arranged by size: 1753 1064 958 825 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5575 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2195 2277 4235 1239 Size: 956 82 1958 2579 Fragments arranged by size: 2579 1958 956 82 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2108 3700 4565 4863 2108 Size: 1592 865 298 2820 Fragments arranged by size: 2820 1592 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4238 882 Size: 617 2739 2219 Fragments arranged by size: 2739 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3366 493 Size: 711 2162 2702 Fragments arranged by size: 2702 2162 711 BsaBI GATnn'nnATC Cuts at: 5569 5569 Size: 5575 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2636 3382 3764 4399 Size: 53 83 186 936 1103 746 382 635 Cuts at: 4399 275 Size: 1451 Fragments arranged by size: 1451 1103 936 746 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 4008 4406 4680 4827 5238 4008 Size: 398 274 147 411 4345 Fragments arranged by size: 4345 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5350 Fragments arranged by size: 5350 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2377 1186 Size: 1191 4384 BseYI C'CCAG_C Cuts at: 2372 4778 5274 2372 Size: 2406 496 2673 Fragments arranged by size: 2673 2406 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 5002 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3025 3786 4814 1540 Size: 275 186 1024 761 1028 2301 Fragments arranged by size: 2301 1028 1024 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2094 3636 3721 4792 2094 Size: 1542 85 1071 2877 Fragments arranged by size: 2877 1542 1071 85 BsmI GAATG_Cn' Cuts at: 3086 3179 3086 Size: 93 5482 BsmBI CGTCTCn'nnnn_ Cuts at: 2643 2643 Size: 5575 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2094 2239 2847 2894 3636 3721 4792 Size: 399 304 145 608 47 742 85 1071 Cuts at: 4792 1391 Size: 2174 Fragments arranged by size: 2174 1071 742 608 399 304 145 85 47 BspEI T'CCGG_A Cuts at: 5238 5238 Size: 5575 BspHI T'CATG_A Cuts at: 3464 5194 3464 Size: 1730 3845 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2326 2637 2930 844 Size: 1482 311 293 3489 Fragments arranged by size: 3489 1482 311 293 BsrBI CCG'CTC Cuts at: 1394 1823 3462 1394 Size: 429 1639 3507 Fragments arranged by size: 3507 1639 429 BsrDI GCAATG_nn' Cuts at: 65 1248 4070 4244 65 Size: 1183 2822 174 1396 Fragments arranged by size: 2822 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4219 4406 1700 Size: 110 2409 187 2869 Fragments arranged by size: 2869 2409 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5575 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5575 BssSI C'ACGA_G Cuts at: 2840 3635 4647 2840 Size: 795 1012 3768 Fragments arranged by size: 3768 1012 795 BstAPI GCAn_nnn'nTGC Cuts at: 794 2454 794 Size: 1660 3915 BstBI TT'CG_AA Cuts at: 4379 4379 Size: 5575 BstEII G'GTnAC_C Cuts at: 1184 2338 1184 Size: 1154 4421 BstXI CCAn_nnnn'nTGG Cuts at: 2152 2152 Size: 5575 BstYI r'GATC_y Cuts at: 1972 2097 2755 2861 2905 3272 3657 3674 5126 Size: 125 658 106 44 367 385 17 1452 Cuts at: 5126 5212 5224 5570 1972 Size: 86 12 346 1977 Fragments arranged by size: 1977 1452 658 385 367 346 125 106 86 44 17 12 Bsu36I CC'TnA_GG Cuts at: 2436 2436 Size: 5575 BtgI C'CryG_G Cuts at: 513 1065 2004 2145 513 Size: 552 939 141 3943 Fragments arranged by size: 3943 939 552 141 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4836 Fragments arranged by size: 4836 683 56 BtsI GCAGTG_nn' Cuts at: 3091 3885 3905 3091 Size: 794 20 4761 Fragments arranged by size: 4761 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5575 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5540 DraI TTT'AAA Cuts at: 2770 2879 2770 Size: 109 5466 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4582 809 Size: 507 3266 1802 Fragments arranged by size: 3266 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 3022 3911 5540 Size: 54 1425 50 275 18 1192 889 1629 Cuts at: 5540 8 Size: 43 Fragments arranged by size: 1629 1425 1192 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3022 1537 Size: 275 1210 4090 Fragments arranged by size: 4090 1210 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2460 2781 3505 1353 Size: 1107 321 724 3423 Fragments arranged by size: 3423 1107 724 321 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4162 4536 4682 387 Size: 1064 138 2573 374 146 1280 Fragments arranged by size: 2573 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2195 2277 3638 4235 5022 5290 1239 Size: 393 563 82 1361 597 787 268 1524 Fragments arranged by size: 1524 1361 787 597 563 393 268 82 EcoRI G'AATT_C Cuts at: 2884 3262 2884 Size: 378 5197 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2546 2842 2546 Size: 296 5279 FspI TGC'GCA Cuts at: 4081 4081 Size: 5575 HaeII r_GCGC'y Cuts at: 1678 4722 1678 Size: 3044 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2360 2392 2597 2629 4216 Size: 32 135 32 788 32 205 32 1587 Cuts at: 4216 4248 4290 4322 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 1587 788 205 135 42 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2299 2919 3165 669 Size: 988 281 361 620 246 3079 Fragments arranged by size: 3079 988 620 361 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5575 HpaI GTT'AAC Cuts at: 2299 3165 2299 Size: 866 4709 KpnI G_GTAC'C Cuts at: 2485 2900 2485 Size: 415 5160 MfeI C'AATT_G Cuts at: 2598 3174 2598 Size: 576 4999 MluI A'CGCG_T Cuts at: 5451 5451 Size: 5575 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2666 4689 4873 1305 Size: 1361 2023 184 2007 Fragments arranged by size: 2023 2007 1361 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3753 Fragments arranged by size: 3753 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2315 3533 3892 4051 518 Size: 648 1149 1218 359 159 2042 Fragments arranged by size: 2042 1218 1149 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2991 3668 4816 5061 1606 Size: 1385 677 1148 245 2120 Fragments arranged by size: 2120 1385 1148 677 245 NcoI C'CATG_G Cuts at: 513 1065 2004 2145 513 Size: 552 939 141 3943 Fragments arranged by size: 3943 939 552 141 NdeI CA'TA_TG Cuts at: 387 387 Size: 5575 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5575 NotI GC'GGCC_GC Cuts at: 3022 3022 Size: 5575 NsiI A_TGCA'T Cuts at: 2133 2133 Size: 5575 NspI r_CATG'y Cuts at: 1132 1229 2131 2933 4478 1132 Size: 97 902 802 1545 2229 Fragments arranged by size: 2229 1545 902 802 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5575 PciI A'CATG_T Cuts at: 4474 4474 Size: 5575 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5575 PmeI GTTT'AAAC Cuts at: 2879 2879 Size: 5575 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3644 3676 5157 5189 3644 Size: 32 1481 32 4030 Fragments arranged by size: 4030 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5575 PsiI TTA'TAA Cuts at: 2657 2742 3145 2657 Size: 85 403 5087 Fragments arranged by size: 5087 403 85 PstI C_TGCA'G Cuts at: 830 2337 2634 2927 830 Size: 1507 297 293 3478 Fragments arranged by size: 3478 1507 297 293 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5575 SalI G'TCGA_C Cuts at: 1936 2917 1936 Size: 981 4594 SbfI CC_TGCA'GG Cuts at: 2337 2927 2337 Size: 590 4985 ScaI AGT'ACT Cuts at: 3823 5535 3823 Size: 1712 3863 SexAI A'CCwGG_T Cuts at: 2851 2851 Size: 5575 SfcI C'TryA_G Cuts at: 826 1045 2333 2630 2725 2923 4058 4739 4930 Size: 219 1288 297 95 198 1135 681 191 Cuts at: 4930 826 Size: 1471 Fragments arranged by size: 1471 1288 1135 681 297 219 198 191 95 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5575 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5575 SmaI CCC'GGG Cuts at: 1872 2902 1872 Size: 1030 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2087 3679 4580 4842 820 Size: 197 926 144 1592 901 262 1553 Fragments arranged by size: 1592 1553 926 901 262 197 144 SnaBI TAC'GTA Cuts at: 493 3366 493 Size: 2873 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5575 SphI G_CATG'C Cuts at: 1132 2933 1132 Size: 1801 3774 SspI AAT'ATT Cuts at: 5 52 3499 5 Size: 47 3447 2081 Fragments arranged by size: 3447 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5575 StyI C'CwwG_G Cuts at: 513 1065 2004 2145 2826 3014 513 Size: 552 939 141 681 188 3074 Fragments arranged by size: 3074 939 681 552 188 141 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2190 3602 3619 3772 3957 4402 325 Size: 1255 610 1412 17 153 185 445 1498 Fragments arranged by size: 1498 1412 1255 610 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2229 3821 5533 Size: 274 80 33 51 1443 252 1592 1712 Cuts at: 5533 96 Size: 138 Fragments arranged by size: 1712 1592 1443 274 252 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5535 5567 5535 Size: 32 5543 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5575 XbaI T'CTAG_A Cuts at: 2407 2911 2407 Size: 504 5071 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5575 XmaI C'CCGG_G Cuts at: 1870 2900 1870 Size: 1030 4545 XmnI GAAnn'nnTTC Cuts at: 3704 3704 Size: 5575 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 2637 3383 276 Size: 53 83 186 936 1103 746 2468 Fragments arranged by size: 2468 1103 936 746 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BfrBI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NsiI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI SalI SbfI ScaI SexAI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BplI Bpu10I BsiWI BstZ17I DraIII EcoICRI EcoNI EcoO109I EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SfiI SfoI SrfI SwaI XcmI