FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6555, 154 aa 1>>>pF1KE6555 154 - 154 aa - 154 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4293+/-0.00027; mu= 11.7203+/- 0.017 mean_var=67.8421+/-13.715, 0's: 0 Z-trim(119.9): 13 B-trim: 47 in 1/54 Lambda= 0.155713 statistics sampled from 34500 (34513) to 34500 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.405), width: 16 Scan time: 4.160 The best scores are: opt bits E(85289) NP_995580 (OMIM: 162340) neuromedin-B isoform 2 pr ( 154) 1014 235.7 2.3e-62 NP_066563 (OMIM: 162340) neuromedin-B isoform 1 pr ( 121) 715 168.5 3.1e-42 XP_016877728 (OMIM: 162340) PREDICTED: neuromedin- ( 145) 357 88.1 5.8e-18 >>NP_995580 (OMIM: 162340) neuromedin-B isoform 2 prepro (154 aa) initn: 1014 init1: 1014 opt: 1014 Z-score: 1240.7 bits: 235.7 E(85289): 2.3e-62 Smith-Waterman score: 1014; 99.4% identity (99.4% similar) in 154 aa overlap (1-154:1-154) 10 20 30 40 50 60 pF1KE6 MARRAGGARMFGSLLLFALLAAGVAPLSWDLPEPRSRASKIRVHSRGNLWATGHFMGKKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_995 MARRAGGARMFGSLLLFALLAAGVAPLSWDLPEPRSRASKIRVHSRGNLWATGHFMGKKS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LEPSSPSPLGTATHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQEAAGTNTAEM :::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::: NP_995 LEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQEAAGTNTAEM 70 80 90 100 110 120 130 140 150 pF1KE6 TPIMGQTQQRGLDCAHPGKVLNGTLLMAPSGCKS :::::::::::::::::::::::::::::::::: NP_995 TPIMGQTQQRGLDCAHPGKVLNGTLLMAPSGCKS 130 140 150 >>NP_066563 (OMIM: 162340) neuromedin-B isoform 1 prepro (121 aa) initn: 715 init1: 715 opt: 715 Z-score: 879.3 bits: 168.5 E(85289): 3.1e-42 Smith-Waterman score: 715; 99.1% identity (99.1% similar) in 110 aa overlap (1-110:1-110) 10 20 30 40 50 60 pF1KE6 MARRAGGARMFGSLLLFALLAAGVAPLSWDLPEPRSRASKIRVHSRGNLWATGHFMGKKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 MARRAGGARMFGSLLLFALLAAGVAPLSWDLPEPRSRASKIRVHSRGNLWATGHFMGKKS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LEPSSPSPLGTATHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQEAAGTNTAEM :::::::::::: ::::::::::::::::::::::::::::::::::::: NP_066 LEPSSPSPLGTAPHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQYRRLLVQILQ 70 80 90 100 110 120 130 140 150 pF1KE6 TPIMGQTQQRGLDCAHPGKVLNGTLLMAPSGCKS NP_066 K >>XP_016877728 (OMIM: 162340) PREDICTED: neuromedin-B is (145 aa) initn: 354 init1: 354 opt: 357 Z-score: 443.4 bits: 88.1 E(85289): 5.8e-18 Smith-Waterman score: 360; 71.1% identity (74.4% similar) in 90 aa overlap (1-90:1-81) 10 20 30 40 50 60 pF1KE6 MARRAGGARMFGSLLLFALLAAGVAPLSWDLPEPRSRASKIRVHSRGNLWATGHFMGKKS ::::::::::::::::::::::::::::::::::::::::::::::::::::: .: XP_016 MARRAGGARMFGSLLLFALLAAGVAPLSWDLPEPRSRASKIRVHSRGNLWATG----ASS 10 20 30 40 50 70 80 90 100 110 120 pF1KE6 LEPSSPSPLGTATHTSLRDQRLQLSHDLLGILLLKKALGVSLSRPAPQIQEAAGTNTAEM : : : : : : ::.. : : XP_016 LSTSYP-----ALFRPLSKQPTQLAEFLPGPGPSHLPASCAILSTCSGKAEGAGFATTQT 60 70 80 90 100 110 154 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:22:29 2016 done: Tue Nov 8 14:22:30 2016 Total Scan time: 4.160 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]