FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2489, 580 aa 1>>>pF1KE2489 580 - 580 aa - 580 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 12.6388+/-0.00131; mu= -19.1962+/- 0.074 mean_var=433.2269+/-101.186, 0's: 0 Z-trim(108.4): 217 B-trim: 359 in 1/53 Lambda= 0.061619 statistics sampled from 9959 (10158) to 9959 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.312), width: 16 Scan time: 3.800 The best scores are: opt bits E(32554) CCDS43071.1 ULK4 gene_id:54986|Hs108|chr3 (1275) 3688 343.5 9.3e-94 >>CCDS43071.1 ULK4 gene_id:54986|Hs108|chr3 (1275 aa) initn: 3685 init1: 3685 opt: 3688 Z-score: 1796.8 bits: 343.5 E(32554): 9.3e-94 Smith-Waterman score: 3688; 96.2% identity (97.9% similar) in 580 aa overlap (1-578:1-575) 10 20 30 40 50 60 pF1KE2 MENFILYEEIGRGSKTVVYKGRRKGTINFVAILCTDKCKRPEITNWVRLTREIKHKNIVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 MENFILYEEIGRGSKTVVYKGRRKGTINFVAILCTDKCKRPEITNWVRLTREIKHKNIVT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 FHEWYETSNHLWLVVELCTGGSLKTVIAQDENLPEDVVREFGIDLISGLHHLHKLGILFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 FHEWYETSNHLWLVVELCTGGSLKTVIAQDENLPEDVVREFGIDLISGLHHLHKLGILFC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 DISPRKILLEGPGTLKFSNFCLAKVEGENLEEFFALVAAEEGGGDNGENVLKKSMKSRVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 DISPRKILLEGPGTLKFSNFCLAKVEGENLEEFFALVAAEEGGGDNGENVLKKSMKSRVK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 GSPVYTAPEVVRGADFSISSDLWSLGCLLYEMFSGKPPFFSESISELTEKILCEDPLPPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 GSPVYTAPEVVRGADFSISSDLWSLGCLLYEMFSGKPPFFSESISELTEKILCEDPLPPI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 PKDSSRPKASSDFINLLDGLLQRDPQKRLTWTRLLQHSFWKKAFAGADQESSVEDLSLSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 PKDSSRPKASSDFINLLDGLLQRDPQKRLTWTRLLQHSFWKKAFAGADQESSVEDLSLSR 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 NTMECSGPQDSKELLQNSQSRQAKGHKSGQPLGHSFRLENPTEFRPKSTLEGQLNESMFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 NTMECSGPQDSKELLQNSQSRQAKGHKSGQPLGHSFRLENPTEFRPKSTLEGQLNESMFL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 LSSRPTPRTSTAVEVSPGEDMTHCSPQKTSPLTKITSGHLSQQDLESQMRELIYTDSDLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 LSSRPTPRTSTAVEVSPGEDMTHCSPQKTSPLTKITSGHLSQQDLESQMRELIYTDSDLV 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 VTPIIDNPKIMKQPPVKFDAKILHLPTYSVDKLLFLKDQDWNDFLQQVCSQIDSTEKSMG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 VTPIIDNPKIMKQPPVKFDAKILHLPTYSVDKLLFLKDQDWNDFLQQVCSQIDSTEKSMG 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE2 ASRAKLNLLCYLCVVAGHQEVATRLLHSPLFQLLIQHLRIAPNWDIRAKVAHVIGLLASH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 ASRAKLNLLCYLCVVAGHQEVATRLLHSPLFQLLIQHLRIAPNWDIRAKVAHVIGLLASH 490 500 510 520 530 540 550 560 570 580 pF1KE2 TAELQENTPVVETTSSIGIGILNCLVQHS--TPVPRQCLVYV ::::::::::::. : .:. :.... . .:::. CCDS43 TAELQENTPVVEA-----IVLLTELIRENFRNSKLKQCLLPTLGELIYLVATQEEKKKNP 550 560 570 580 590 CCDS43 RECWAVPLAAYTVLMRCLREGEERVVNHMAAKIIENVCTTFSAQSQGFITGEIGPILWYL 600 610 620 630 640 650 580 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 20:56:02 2016 done: Mon Nov 7 20:56:03 2016 Total Scan time: 3.800 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]