FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6390, 418 aa 1>>>pF1KE6390 418 - 418 aa - 418 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7634+/-0.000421; mu= 20.0071+/- 0.026 mean_var=56.8868+/-11.612, 0's: 0 Z-trim(108.6): 39 B-trim: 0 in 0/52 Lambda= 0.170047 statistics sampled from 16706 (16728) to 16706 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.55), E-opt: 0.2 (0.196), width: 16 Scan time: 5.680 The best scores are: opt bits E(85289) NP_037468 (OMIM: 609213,617056) protein transport ( 476) 2582 642.1 8.7e-184 >>NP_037468 (OMIM: 609213,617056) protein transport prot (476 aa) initn: 2582 init1: 2582 opt: 2582 Z-score: 3420.6 bits: 642.1 E(85289): 8.7e-184 Smith-Waterman score: 2582; 93.2% identity (99.3% similar) in 414 aa overlap (1-414:1-414) 10 20 30 40 50 60 pF1KE6 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD :.:::::::::::..:::::::::::::.::::::::::::::::::::::::::::::: NP_037 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_037 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS :::::::.::::::::::::.:::::::::: :::::::::::::::::::::::::::: NP_037 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP ::::::::::::::::::::.::::: :::::.::::::::::::::::::::::::::: NP_037 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN ::::::::.:::::::::::::::::::::::::::..:::::::::::::::::::::: NP_037 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH :::::::::.:::::.::.::: :.:.:.:::::.:::::::::::::::.:...::::: NP_037 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVH 310 320 330 340 350 360 370 380 390 400 410 pF1KE6 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNSARA .::::.:::::::::::::::::::::::::::::::::::::::.:::::::: NP_037 AVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA 370 380 390 400 410 420 NP_037 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 430 440 450 460 470 418 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 12:50:47 2016 done: Tue Nov 8 12:50:48 2016 Total Scan time: 5.680 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]