FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6390, 418 aa 1>>>pF1KE6390 418 - 418 aa - 418 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1304+/- 0.001; mu= 17.7548+/- 0.060 mean_var=59.0580+/-12.057, 0's: 0 Z-trim(102.5): 35 B-trim: 0 in 0/50 Lambda= 0.166892 statistics sampled from 6981 (6998) to 6981 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.574), E-opt: 0.2 (0.215), width: 16 Scan time: 1.460 The best scores are: opt bits E(32554) CCDS44358.1 SEC61A2 gene_id:55176|Hs108|chr10 ( 437) 2709 661.0 6.2e-190 CCDS7088.1 SEC61A2 gene_id:55176|Hs108|chr10 ( 476) 2708 660.8 7.9e-190 CCDS3046.1 SEC61A1 gene_id:29927|Hs108|chr3 ( 476) 2582 630.4 1.1e-180 CCDS44359.1 SEC61A2 gene_id:55176|Hs108|chr10 ( 454) 2387 583.5 1.4e-166 >>CCDS44358.1 SEC61A2 gene_id:55176|Hs108|chr10 (437 aa) initn: 2709 init1: 2709 opt: 2709 Z-score: 3523.4 bits: 661.0 E(32554): 6.2e-190 Smith-Waterman score: 2709; 99.3% identity (99.5% similar) in 417 aa overlap (1-417:1-417) 10 20 30 40 50 60 pF1KE6 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH 310 320 330 340 350 360 370 380 390 400 410 pF1KE6 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNSARA :::::::::::::::::::::::::::::::::::::::::::::::::::::: . CCDS44 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRPKVKL 370 380 390 400 410 420 CCDS44 RRWKGEGRHFTKRILFY 430 >>CCDS7088.1 SEC61A2 gene_id:55176|Hs108|chr10 (476 aa) initn: 2708 init1: 2708 opt: 2708 Z-score: 3521.5 bits: 660.8 E(32554): 7.9e-190 Smith-Waterman score: 2708; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414) 10 20 30 40 50 60 pF1KE6 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS70 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS70 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS70 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS70 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS70 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS70 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH 310 320 330 340 350 360 370 380 390 400 410 pF1KE6 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNSARA :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS70 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTA 370 380 390 400 410 420 CCDS70 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF 430 440 450 460 470 >>CCDS3046.1 SEC61A1 gene_id:29927|Hs108|chr3 (476 aa) initn: 2582 init1: 2582 opt: 2582 Z-score: 3357.5 bits: 630.4 E(32554): 1.1e-180 Smith-Waterman score: 2582; 93.2% identity (99.3% similar) in 414 aa overlap (1-414:1-414) 10 20 30 40 50 60 pF1KE6 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD :.:::::::::::..:::::::::::::.::::::::::::::::::::::::::::::: CCDS30 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS :::::::.::::::::::::.:::::::::: :::::::::::::::::::::::::::: CCDS30 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGIS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP ::::::::::::::::::::.::::: :::::.::::::::::::::::::::::::::: CCDS30 LFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN ::::::::.:::::::::::::::::::::::::::..:::::::::::::::::::::: CCDS30 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSN 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH :::::::::.:::::.::.::: :.:.:.:::::.:::::::::::::::.:...::::: CCDS30 LYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVH 310 320 330 340 350 360 370 380 390 400 410 pF1KE6 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNSARA .::::.:::::::::::::::::::::::::::::::::::::::.:::::::: CCDS30 AVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTA 370 380 390 400 410 420 CCDS30 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 430 440 450 460 470 >>CCDS44359.1 SEC61A2 gene_id:55176|Hs108|chr10 (454 aa) initn: 2387 init1: 2387 opt: 2387 Z-score: 3104.1 bits: 583.5 E(32554): 1.4e-166 Smith-Waterman score: 2501; 94.7% identity (94.7% similar) in 414 aa overlap (1-414:1-392) 10 20 30 40 50 60 pF1KE6 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD :::::::::::::::::::::::::: :::::::::::: CCDS44 MGIKFLEVIKPFCAVLPEIQKPERKI----------------------PLFGIMSSDSAD 10 20 30 70 80 90 100 110 120 pF1KE6 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE6 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGIS 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE6 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 LFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLP 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE6 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 NLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSN 220 230 240 250 260 270 310 320 330 340 350 360 pF1KE6 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 LYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVH 280 290 300 310 320 330 370 380 390 400 410 pF1KE6 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNSARA :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 VVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTA 340 350 360 370 380 390 CCDS44 AAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF 400 410 420 430 440 450 418 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 12:50:46 2016 done: Tue Nov 8 12:50:47 2016 Total Scan time: 1.460 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]