FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6667, 298 aa 1>>>pF1KE6667 298 - 298 aa - 298 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9304+/-0.000773; mu= 13.5323+/- 0.047 mean_var=90.1362+/-17.601, 0's: 0 Z-trim(110.2): 12 B-trim: 4 in 1/52 Lambda= 0.135090 statistics sampled from 11431 (11435) to 11431 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.351), width: 16 Scan time: 2.560 The best scores are: opt bits E(32554) CCDS81836.1 TDP1 gene_id:55775|Hs108|chr14 ( 578) 2019 403.2 2.3e-112 CCDS9888.1 TDP1 gene_id:55775|Hs108|chr14 ( 608) 2019 403.3 2.4e-112 >>CCDS81836.1 TDP1 gene_id:55775|Hs108|chr14 (578 aa) initn: 2019 init1: 2019 opt: 2019 Z-score: 2130.8 bits: 403.2 E(32554): 2.3e-112 Smith-Waterman score: 2019; 99.3% identity (99.3% similar) in 298 aa overlap (1-298:1-298) 10 20 30 40 50 60 pF1KE6 MSQEGDYGRWTISSSDESEEEKPKPDKPSTSSLLCARQGAANEPRYTCSEAQKAAHKRKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 MSQEGDYGRWTISSSDESEEEKPKPDKPSTSSLLCARQGAANEPRYTCSEAQKAAHKRKI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SPVKFSNTDSVLPPKRQKSGSQEDLGWCLSSSDDELQPEMPQKQAEKVVIKKEKDISAPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 SPVKFSNTDSVLPPKRQKSGSQEDLGWCLSSSDDELQPEMPQKQAEKVVIKKEKDISAPN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 DGTAQRTENHGAPACHRLKEEEDEYETSGEGQDIWDMLDKGNPFQFYLTRVSGVKPKYNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 DGTAQRTENHGAPACHRLKEEEDEYETSGEGQDIWDMLDKGNPFQFYLTRVSGVKPKYNS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 GALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 GALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHA 190 200 210 220 230 240 250 260 270 280 290 pF1KE6 QAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGTHL ::::::::::::::::::::::::::::::::::::::::::::::::::::::: : CCDS81 QAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSP 250 260 270 280 290 300 CCDS81 LYPRIADGTHKSGESPTHFKADLISYLMAYNAPSLKEWIDVIHKHDLSETNVYLIGSTPG 310 320 330 340 350 360 >>CCDS9888.1 TDP1 gene_id:55775|Hs108|chr14 (608 aa) initn: 2019 init1: 2019 opt: 2019 Z-score: 2130.5 bits: 403.3 E(32554): 2.4e-112 Smith-Waterman score: 2019; 99.3% identity (99.3% similar) in 298 aa overlap (1-298:1-298) 10 20 30 40 50 60 pF1KE6 MSQEGDYGRWTISSSDESEEEKPKPDKPSTSSLLCARQGAANEPRYTCSEAQKAAHKRKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS98 MSQEGDYGRWTISSSDESEEEKPKPDKPSTSSLLCARQGAANEPRYTCSEAQKAAHKRKI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SPVKFSNTDSVLPPKRQKSGSQEDLGWCLSSSDDELQPEMPQKQAEKVVIKKEKDISAPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS98 SPVKFSNTDSVLPPKRQKSGSQEDLGWCLSSSDDELQPEMPQKQAEKVVIKKEKDISAPN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 DGTAQRTENHGAPACHRLKEEEDEYETSGEGQDIWDMLDKGNPFQFYLTRVSGVKPKYNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS98 DGTAQRTENHGAPACHRLKEEEDEYETSGEGQDIWDMLDKGNPFQFYLTRVSGVKPKYNS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 GALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS98 GALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHA 190 200 210 220 230 240 250 260 270 280 290 pF1KE6 QAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGTHL ::::::::::::::::::::::::::::::::::::::::::::::::::::::: : CCDS98 QAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSP 250 260 270 280 290 300 CCDS98 LYPRIADGTHKSGESPTHFKADLISYLMAYNAPSLKEWIDVIHKHDLSETNVYLIGSTPG 310 320 330 340 350 360 298 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 15:15:31 2016 done: Tue Nov 8 15:15:32 2016 Total Scan time: 2.560 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]