FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2707, 237 aa 1>>>pF1KE2707 237 - 237 aa - 237 aa Library: /omim/omim.rfq.tfa 63717318 residues in 89588 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1244+/-0.00031; mu= 11.2697+/- 0.019 mean_var=95.3041+/-18.710, 0's: 0 Z-trim(118.3): 11 B-trim: 33 in 1/51 Lambda= 0.131377 statistics sampled from 31807 (31817) to 31807 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.355), width: 16 Scan time: 3.240 The best scores are: opt bits E(89588) NP_919415 (OMIM: 605703) vesicle-associated membra ( 249) 1590 311.0 1.3e-84 XP_016881568 (OMIM: 605703) PREDICTED: vesicle-ass ( 236) 1455 285.4 6.1e-77 NP_004729 (OMIM: 182980,605704,608627) vesicle-ass ( 243) 1001 199.4 5e-51 NP_003565 (OMIM: 605703) vesicle-associated membra ( 294) 918 183.7 3.2e-46 XP_011524071 (OMIM: 605703) PREDICTED: vesicle-ass ( 281) 783 158.1 1.5e-38 NP_001182606 (OMIM: 182980,605704,608627) vesicle- ( 99) 376 80.6 1.1e-15 >>NP_919415 (OMIM: 605703) vesicle-associated membrane p (249 aa) initn: 1590 init1: 1590 opt: 1590 Z-score: 1640.6 bits: 311.0 E(89588): 1.3e-84 Smith-Waterman score: 1590; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:8-244) 10 20 30 40 50 pF1KE2 MAKHEQILVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYC ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_919 MASASGAMAKHEQILVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYC 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE2 VRPNSGIIDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_919 VRPNSGIIDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDE 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE2 LMDSKLRCVFEMPNENDKLNDMEPSKAVPLNASKQDGPMPKPHSVSLNDTETRKLMEECK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_919 LMDSKLRCVFEMPNENDKLNDMEPSKAVPLNASKQDGPMPKPHSVSLNDTETRKLMEECK 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE2 RLQGEMMKLSEENRHLRDEGLRLRKVAHSDKPGSTSTASFRDNVTSPLPSLLVVIAAIFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_919 RLQGEMMKLSEENRHLRDEGLRLRKVAHSDKPGSTSTASFRDNVTSPLPSLLVVIAAIFI 190 200 210 220 230 240 pF1KE2 GFFL :::: NP_919 GFFLGKFIL >>XP_016881568 (OMIM: 605703) PREDICTED: vesicle-associa (236 aa) initn: 1455 init1: 1455 opt: 1455 Z-score: 1502.7 bits: 285.4 E(89588): 6.1e-77 Smith-Waterman score: 1455; 100.0% identity (100.0% similar) in 217 aa overlap (21-237:15-231) 10 20 30 40 50 60 pF1KE2 MAKHEQILVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGI :::::::::::::::::::::::::::::::::::::::: XP_016 MLQSKYSKMFIVECPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGI 10 20 30 40 50 70 80 90 100 110 120 pF1KE2 IDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 IDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLR 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE2 CVFEMPNENDKLNDMEPSKAVPLNASKQDGPMPKPHSVSLNDTETRKLMEECKRLQGEMM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 CVFEMPNENDKLNDMEPSKAVPLNASKQDGPMPKPHSVSLNDTETRKLMEECKRLQGEMM 120 130 140 150 160 170 190 200 210 220 230 pF1KE2 KLSEENRHLRDEGLRLRKVAHSDKPGSTSTASFRDNVTSPLPSLLVVIAAIFIGFFL ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KLSEENRHLRDEGLRLRKVAHSDKPGSTSTASFRDNVTSPLPSLLVVIAAIFIGFFLGKF 180 190 200 210 220 230 XP_016 IL >>NP_004729 (OMIM: 182980,605704,608627) vesicle-associa (243 aa) initn: 985 init1: 800 opt: 1001 Z-score: 1037.4 bits: 199.4 E(89588): 5e-51 Smith-Waterman score: 1001; 63.2% identity (87.0% similar) in 239 aa overlap (1-234:1-239) 10 20 30 40 50 60 pF1KE2 MAKHEQILVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGI ::: ::.: :.: .:::.::::::::::::: ::.::.::::::::::::::::::::: NP_004 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 IDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLR :: :....:::::::::::::::::::::::..::: .:::::::::::::..::::::: NP_004 IDAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLR 70 80 90 100 110 120 130 140 150 160 170 pF1KE2 CVFEMPNENDKLNDMEPSKAVPLNASKQDGPM-PKPHSVSLNDTETRKLMEECKRLQGEM ::::.: :::: .:.: .: . .::: . :. : : ::.:::..:.::::::::::. NP_004 CVFELPAENDKPHDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECKRLQGEV 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE2 MKLSEENRHLRDE-GLRLRKVAHSDKPGSTSTASFRDN-VTSPLPSLLVV--IAAIFIGF ..: :::.....: :::.::...:..: :. . . ... ... : .:.:. :....:: NP_004 QRLREENKQFKEEDGLRMRKTVQSNSPISALAPTGKEEGLSTRLLALVVLFFIVGVIIGK 190 200 210 220 230 240 pF1KE2 FL NP_004 IAL >>NP_003565 (OMIM: 605703) vesicle-associated membrane p (294 aa) initn: 912 init1: 912 opt: 918 Z-score: 951.2 bits: 183.7 E(89588): 3.2e-46 Smith-Waterman score: 1413; 83.3% identity (83.3% similar) in 269 aa overlap (1-224:8-276) 10 20 30 40 50 pF1KE2 MAKHEQILVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYC ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MASASGAMAKHEQILVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYC 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE2 VRPNSGIIDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 VRPNSGIIDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDE 70 80 90 100 110 120 120 130 pF1KE2 LMDSKLRCVFEMPNENDKL----------------------------------------- ::::::::::::::::::: NP_003 LMDSKLRCVFEMPNENDKLGITPPGNAPTVTSMSSINNTVATPASYHTKDDPRGLSVLKQ 130 140 150 160 170 180 140 150 160 170 180 pF1KE2 ----NDMEPSKAVPLNASKQDGPMPKPHSVSLNDTETRKLMEECKRLQGEMMKLSEENRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 EKQKNDMEPSKAVPLNASKQDGPMPKPHSVSLNDTETRKLMEECKRLQGEMMKLSEENRH 190 200 210 220 230 240 190 200 210 220 230 pF1KE2 LRDEGLRLRKVAHSDKPGSTSTASFRDNVTSPLPSLLVVIAAIFIGFFL :::::::::::::::::::::::::::::::::::: NP_003 LRDEGLRLRKVAHSDKPGSTSTASFRDNVTSPLPSLLVVIAAIFIGFFLGKFIL 250 260 270 280 290 >>XP_011524071 (OMIM: 605703) PREDICTED: vesicle-associa (281 aa) initn: 777 init1: 777 opt: 783 Z-score: 813.2 bits: 158.1 E(89588): 1.5e-38 Smith-Waterman score: 1278; 81.9% identity (81.9% similar) in 249 aa overlap (21-224:15-263) 10 20 30 40 50 60 pF1KE2 MAKHEQILVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGI :::::::::::::::::::::::::::::::::::::::: XP_011 MLQSKYSKMFIVECPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGI 10 20 30 40 50 70 80 90 100 110 120 pF1KE2 IDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 IDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLR 60 70 80 90 100 110 130 pF1KE2 CVFEMPNENDKL---------------------------------------------NDM :::::::::::: ::: XP_011 CVFEMPNENDKLGITPPGNAPTVTSMSSINNTVATPASYHTKDDPRGLSVLKQEKQKNDM 120 130 140 150 160 170 140 150 160 170 180 190 pF1KE2 EPSKAVPLNASKQDGPMPKPHSVSLNDTETRKLMEECKRLQGEMMKLSEENRHLRDEGLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 EPSKAVPLNASKQDGPMPKPHSVSLNDTETRKLMEECKRLQGEMMKLSEENRHLRDEGLR 180 190 200 210 220 230 200 210 220 230 pF1KE2 LRKVAHSDKPGSTSTASFRDNVTSPLPSLLVVIAAIFIGFFL ::::::::::::::::::::::::::::: XP_011 LRKVAHSDKPGSTSTASFRDNVTSPLPSLLVVIAAIFIGFFLGKFIL 240 250 260 270 280 >>NP_001182606 (OMIM: 182980,605704,608627) vesicle-asso (99 aa) initn: 392 init1: 372 opt: 376 Z-score: 402.9 bits: 80.6 E(89588): 1.1e-15 Smith-Waterman score: 376; 62.2% identity (81.1% similar) in 90 aa overlap (1-90:1-90) 10 20 30 40 50 60 pF1KE2 MAKHEQILVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGI ::: ::.: :.: .:::.::::::::::::: ::.::.::::::::::::::::::::: NP_001 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 IDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDELMDSKLR :: :....:: : . . ... .: . NP_001 IDAGASINVSGRRWTADEEDSAEQQPHFSISPNWEGRRP 70 80 90 237 residues in 1 query sequences 63717318 residues in 89588 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Dec 15 09:59:30 2017 done: Fri Dec 15 09:59:31 2017 Total Scan time: 3.240 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]