FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2769, 471 aa 1>>>pF1KE2769 471 - 471 aa - 471 aa Library: human.CCDS.faa 18921897 residues in 33420 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.8300+/-0.00084; mu= 7.3391+/- 0.051 mean_var=147.7595+/-29.343, 0's: 0 Z-trim(112.3): 55 B-trim: 3 in 1/52 Lambda= 0.105511 statistics sampled from 13235 (13290) to 13235 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.398), width: 16 Scan time: 1.750 The best scores are: opt bits E(33420) CCDS11748.1 ST6GALNAC1 gene_id:55808|Hs109|chr17 ( 600) 2915 455.3 8.5e-128 CCDS11747.1 ST6GALNAC2 gene_id:10610|Hs109|chr17 ( 374) 399 72.1 1.1e-12 >>CCDS11748.1 ST6GALNAC1 gene_id:55808|Hs109|chr17 (600 aa) initn: 2915 init1: 2915 opt: 2915 Z-score: 2408.0 bits: 455.3 E(33420): 8.5e-128 Smith-Waterman score: 2915; 99.5% identity (100.0% similar) in 437 aa overlap (1-437:1-437) 10 20 30 40 50 60 pF1KE2 MRSCLWRCRHLSQGVQWSLLLAVLVFFLFALPSFIKEPQTKPSRHQRTENIKERSLQSLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MRSCLWRCRHLSQGVQWSLLLAVLVFFLFALPSFIKEPQTKPSRHQRTENIKERSLQSLA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 KPKSQAPTRARRTTIYAEPVPENNALNTQTQPKAHTTGDRGKEANQAPPEEQDKVPHTAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 KPKSQAPTRARRTTIYAEPVPENNALNTQTQPKAHTTGDRGKEANQAPPEEQDKVPHTAQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 RAAWKSPEKEKTMVNTLSPRGQDAGMASGRTEAQSWKSQDTKTTKGNGGQTRKLTASRTV ::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::: CCDS11 RAAWKSPEKEKTMVNTLSPRGQDAGMASGRTEAQSWKSQDTKTTQGNGGQTRKLTASRTV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 SEKHQGKAATTAKTLIPKSQHRMLAPTGAVSTRTRQKGVTTAVIPPKEKKPQATPPPAPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 SEKHQGKAATTAKTLIPKSQHRMLAPTGAVSTRTRQKGVTTAVIPPKEKKPQATPPPAPF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 QSPTTQRNQRLKAANFKSEPRWDFEEKYSFEIGGLQTTCPDSVKIKASKSLWLQKLFLPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 QSPTTQRNQRLKAANFKSEPRWDFEEKYSFEIGGLQTTCPDSVKIKASKSLWLQKLFLPN 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 LTLFLDSRHFNQSEWDRLEHFAPPFGFMELNYSLVQKVVTRFPPVPQQQLLLASLPAGSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 LTLFLDSRHFNQSEWDRLEHFAPPFGFMELNYSLVQKVVTRFPPVPQQQLLLASLPAGSL 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 RCITCAVVGNGGILNNSHIGQEIDSHDYVFRLSGALIKGYEQDVGTRTSFYGFTAFSLTQ ::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::: CCDS11 RCITCAVVGNGGILNNSHMGQEIDSHDYVFRLSGALIKGYEQDVGTRTSFYGFTAFSLTQ 370 380 390 400 410 420 430 440 450 460 470 pF1KE2 SLLILGNRGFKNVPLGKAQTPGSFSGSPAHGQVPVAAPRLSPIHEEQVSEV ::::::::::::::::: CCDS11 SLLILGNRGFKNVPLGKDVRYLHFLEGTRDYEWLEALLMNQTVMSKNLFWFRHRPQEAFR 430 440 450 460 470 480 >>CCDS11747.1 ST6GALNAC2 gene_id:10610|Hs109|chr17 (374 aa) initn: 385 init1: 335 opt: 399 Z-score: 341.2 bits: 72.1 E(33420): 1.1e-12 Smith-Waterman score: 399; 37.9% identity (66.7% similar) in 174 aa overlap (264-437:51-223) 240 250 260 270 280 290 pF1KE2 TPPPAPFQSPTTQRNQRLKAANFKSEPRWDFEEKYSFEIGGLQTTCPDSVKIKASKSLWL :. : : : .: ... .. . CCDS11 GLLFALYFSAVQRYPGPAAGARDTTSFEAFFQSKASNSWTGKGQACRHLLHLAIQRHPHF 30 40 50 60 70 80 300 310 320 330 340 350 pF1KE2 QKLFLPNLTLFLDSRHFNQSEWDRLEHFAPPFGFMELNYSLVQKVVTRFPPVPQQQLLLA . :: .. ..: . :. . :::: . :.:. :..... .... . . .:. CCDS11 RGLFNLSIPVLLWGDLFTPALWDRLSQHKAPYGWRGLSHQVIASTLSLLNGSESAKLFAP 90 100 110 120 130 140 360 370 380 390 400 410 pF1KE2 SLPAGSLRCITCAVVGNGGILNNSHIGQEIDSHDYVFRLSGALIKGYEQDVGTRTSFYGF . .:: :::::::::::.:. : .::.:::::::.::.:::.:.::::.:::::: CCDS11 PRDTPP-KCIRCAVVGNGGILNGSRQGPNIDAHDYVFRLNGAVIKGFERDVGTKTSFYGF 150 160 170 180 190 420 430 440 450 460 470 pF1KE2 TAFSLTQSLLILGNRGFKNVPLGKAQTPGSFSGSPAHGQVPVAAPRLSPIHEEQVSEV :. .. .::. : :: .:: :. CCDS11 TVNTMKNSLVSYWNLGFTSVPQGQDLQYIFIPSDIRDYVMLRSAILGVPVPEGLDKGDRP 200 210 220 230 240 250 471 residues in 1 query sequences 18921897 residues in 33420 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Jul 3 20:43:17 2020 done: Fri Jul 3 20:43:17 2020 Total Scan time: 1.750 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]