FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6543, 107 aa 1>>>pF1KE6543 107 - 107 aa - 107 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.6121+/-0.000248; mu= 14.1428+/- 0.016 mean_var=58.3821+/-11.823, 0's: 0 Z-trim(122.2): 12 B-trim: 1208 in 1/54 Lambda= 0.167855 statistics sampled from 39888 (39900) to 39888 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.821), E-opt: 0.2 (0.468), width: 16 Scan time: 3.340 The best scores are: opt bits E(85289) XP_011527090 (OMIM: 139190) PREDICTED: somatoliber ( 107) 709 178.5 1.9e-45 NP_001171660 (OMIM: 139190) somatoliberin isoform ( 107) 709 178.5 1.9e-45 XP_011527086 (OMIM: 139190) PREDICTED: somatoliber ( 108) 697 175.6 1.4e-44 NP_066567 (OMIM: 139190) somatoliberin isoform 1 p ( 108) 697 175.6 1.4e-44 NP_003372 (OMIM: 192320) VIP peptides isoform 1 pr ( 170) 149 43.0 0.00018 NP_919416 (OMIM: 192320) VIP peptides isoform 2 pr ( 169) 148 42.8 0.00021 XP_006715625 (OMIM: 192320) PREDICTED: VIP peptide ( 169) 136 39.9 0.0016 XP_005267192 (OMIM: 192320) PREDICTED: VIP peptide ( 168) 135 39.6 0.0018 >>XP_011527090 (OMIM: 139190) PREDICTED: somatoliberin i (107 aa) initn: 709 init1: 709 opt: 709 Z-score: 937.1 bits: 178.5 E(85289): 1.9e-45 Smith-Waterman score: 709; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107) 10 20 30 40 50 60 pF1KE6 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDIMSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDIMSR 10 20 30 40 50 60 70 80 90 100 pF1KE6 QQGESNQERGARARLGRQVDSMWAEQKQMELESILVALLQKHRNSQG ::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QQGESNQERGARARLGRQVDSMWAEQKQMELESILVALLQKHRNSQG 70 80 90 100 >>NP_001171660 (OMIM: 139190) somatoliberin isoform 2 pr (107 aa) initn: 709 init1: 709 opt: 709 Z-score: 937.1 bits: 178.5 E(85289): 1.9e-45 Smith-Waterman score: 709; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107) 10 20 30 40 50 60 pF1KE6 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDIMSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDIMSR 10 20 30 40 50 60 70 80 90 100 pF1KE6 QQGESNQERGARARLGRQVDSMWAEQKQMELESILVALLQKHRNSQG ::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QQGESNQERGARARLGRQVDSMWAEQKQMELESILVALLQKHRNSQG 70 80 90 100 >>XP_011527086 (OMIM: 139190) PREDICTED: somatoliberin i (108 aa) initn: 675 init1: 675 opt: 697 Z-score: 921.4 bits: 175.6 E(85289): 1.4e-44 Smith-Waterman score: 697; 99.1% identity (99.1% similar) in 108 aa overlap (1-107:1-108) 10 20 30 40 50 60 pF1KE6 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDIMSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDIMSR 10 20 30 40 50 60 70 80 90 100 pF1KE6 QQGESNQERGARARLGRQVDSMWAEQKQMELESILVALLQKH-RNSQG :::::::::::::::::::::::::::::::::::::::::: ::::: XP_011 QQGESNQERGARARLGRQVDSMWAEQKQMELESILVALLQKHSRNSQG 70 80 90 100 >>NP_066567 (OMIM: 139190) somatoliberin isoform 1 prepr (108 aa) initn: 675 init1: 675 opt: 697 Z-score: 921.4 bits: 175.6 E(85289): 1.4e-44 Smith-Waterman score: 697; 99.1% identity (99.1% similar) in 108 aa overlap (1-107:1-108) 10 20 30 40 50 60 pF1KE6 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDIMSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_066 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDIMSR 10 20 30 40 50 60 70 80 90 100 pF1KE6 QQGESNQERGARARLGRQVDSMWAEQKQMELESILVALLQKH-RNSQG :::::::::::::::::::::::::::::::::::::::::: ::::: NP_066 QQGESNQERGARARLGRQVDSMWAEQKQMELESILVALLQKHSRNSQG 70 80 90 100 >>NP_003372 (OMIM: 192320) VIP peptides isoform 1 prepro (170 aa) initn: 141 init1: 104 opt: 149 Z-score: 201.4 bits: 43.0 E(85289): 0.00018 Smith-Waterman score: 149; 31.8% identity (74.1% similar) in 85 aa overlap (28-107:77-159) 10 20 30 40 50 pF1KE6 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDI : :.::..::... :.::::::.: :... NP_003 NEPDQVSLKEDIDMLQNALAENDTPYYDVSRNARHADGVFTSDFSKLLGQLSAKKYLESL 50 60 70 80 90 100 60 70 80 90 100 pF1KE6 MSRQQGESNQERGARARLGRQVDSMWAE-----QKQMELESILVALLQKHRNSQG :... . . .: . .. :. :..... .::: ... : ..:. .:.:.: NP_003 MGKRVSSNISEDPVPVK--RHSDAVFTDNYTRLRKQMAVKKYLNSILNGKRSSEGESPDF 110 120 130 140 150 160 NP_003 PEELEK 170 >>NP_919416 (OMIM: 192320) VIP peptides isoform 2 prepro (169 aa) initn: 141 init1: 104 opt: 148 Z-score: 200.1 bits: 42.8 E(85289): 0.00021 Smith-Waterman score: 148; 32.9% identity (72.0% similar) in 82 aa overlap (28-107:77-158) 10 20 30 40 50 pF1KE6 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDI : :.::..::... :.::::::.: :... NP_919 NEPDQVSLKEDIDMLQNALAENDTPYYDVSRNARHADGVFTSDFSKLLGQLSAKKYLESL 50 60 70 80 90 100 60 70 80 90 100 pF1KE6 MSRQQGESNQERGARARLGRQV--DSMWAEQKQMELESILVALLQKHRNSQG :... .. ... : . : :.. .::: ... : ..:. .:.:.: NP_919 MGKRVSNISEDPVPVKRHSDAVFTDNYTRLRKQMAVKKYLNSILNGKRSSEGESPDFPEE 110 120 130 140 150 160 NP_919 LEK >>XP_006715625 (OMIM: 192320) PREDICTED: VIP peptides is (169 aa) initn: 126 init1: 104 opt: 136 Z-score: 184.4 bits: 39.9 E(85289): 0.0016 Smith-Waterman score: 136; 31.8% identity (72.9% similar) in 85 aa overlap (28-107:77-158) 10 20 30 40 50 pF1KE6 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDI : :.::..::... :.::::::.: :... XP_006 NEPDQVSLKEDIDMLQNALAENDTPYYDVSRNARHADGVFTSDFSKLLGQLSAKKYLESL 50 60 70 80 90 100 60 70 80 90 100 pF1KE6 MSRQQGESNQERGARARLGRQVDSMWAE-----QKQMELESILVALLQKHRNSQG :... . . .: . .. :. :..... .::: ... : ..:. .: :.: XP_006 MGKRVSSNISEDPVPVK--RHSDAVFTDNYTRLRKQMAVKKYLNSILNGKR-SEGESPDF 110 120 130 140 150 160 XP_006 PEELEK >>XP_005267192 (OMIM: 192320) PREDICTED: VIP peptides is (168 aa) initn: 126 init1: 104 opt: 135 Z-score: 183.2 bits: 39.6 E(85289): 0.0018 Smith-Waterman score: 135; 32.9% identity (70.7% similar) in 82 aa overlap (28-107:77-157) 10 20 30 40 50 pF1KE6 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDI : :.::..::... :.::::::.: :... XP_005 NEPDQVSLKEDIDMLQNALAENDTPYYDVSRNARHADGVFTSDFSKLLGQLSAKKYLESL 50 60 70 80 90 100 60 70 80 90 100 pF1KE6 MSRQQGESNQERGARARLGRQV--DSMWAEQKQMELESILVALLQKHRNSQG :... .. ... : . : :.. .::: ... : ..:. .: :.: XP_005 MGKRVSNISEDPVPVKRHSDAVFTDNYTRLRKQMAVKKYLNSILNGKR-SEGESPDFPEE 110 120 130 140 150 160 XP_005 LEK 107 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:16:06 2016 done: Tue Nov 8 14:16:07 2016 Total Scan time: 3.340 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]