FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6543, 107 aa
  1>>>pF1KE6543 107 - 107 aa - 107 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8000+/-0.00049; mu= 13.0631+/- 0.030
 mean_var=58.4525+/-11.514, 0's: 0 Z-trim(114.9): 6  B-trim: 0 in 0/51
 Lambda= 0.167754
 statistics sampled from 15404 (15410) to 15404 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.821), E-opt: 0.2 (0.473), width:  16
 Scan time:  1.490

The best scores are:                                      opt bits E(32554)
CCDS54460.1 GHRH gene_id:2691|Hs108|chr20          ( 107)  709 178.4 7.4e-46
CCDS13292.1 GHRH gene_id:2691|Hs108|chr20          ( 108)  697 175.5 5.6e-45


>>CCDS54460.1 GHRH gene_id:2691|Hs108|chr20               (107 aa)
 initn: 709 init1: 709 opt: 709  Z-score: 936.8  bits: 178.4 E(32554): 7.4e-46
Smith-Waterman score: 709; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107)

               10        20        30        40        50        60
pF1KE6 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDIMSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDIMSR
               10        20        30        40        50        60

               70        80        90       100       
pF1KE6 QQGESNQERGARARLGRQVDSMWAEQKQMELESILVALLQKHRNSQG
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QQGESNQERGARARLGRQVDSMWAEQKQMELESILVALLQKHRNSQG
               70        80        90       100       

>>CCDS13292.1 GHRH gene_id:2691|Hs108|chr20               (108 aa)
 initn: 675 init1: 675 opt: 697  Z-score: 921.0  bits: 175.5 E(32554): 5.6e-45
Smith-Waterman score: 697; 99.1% identity (99.1% similar) in 108 aa overlap (1-107:1-108)

               10        20        30        40        50        60
pF1KE6 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDIMSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MPLWVFFFVILTLSNSSHCSPPPPLTLRMRRYADAIFTNSYRKVLGQLSARKLLQDIMSR
               10        20        30        40        50        60

               70        80        90       100        
pF1KE6 QQGESNQERGARARLGRQVDSMWAEQKQMELESILVALLQKH-RNSQG
       :::::::::::::::::::::::::::::::::::::::::: :::::
CCDS13 QQGESNQERGARARLGRQVDSMWAEQKQMELESILVALLQKHSRNSQG
               70        80        90       100        




107 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:16:06 2016 done: Tue Nov  8 14:16:06 2016
 Total Scan time:  1.490 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]