FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5440, 329 aa 1>>>pF1KE5440 329 - 329 aa - 329 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7080+/-0.000822; mu= 14.0503+/- 0.049 mean_var=73.0138+/-14.497, 0's: 0 Z-trim(107.2): 32 B-trim: 3 in 1/48 Lambda= 0.150097 statistics sampled from 9386 (9410) to 9386 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.289), width: 16 Scan time: 2.560 The best scores are: opt bits E(32554) CCDS2875.1 ACTR8 gene_id:93973|Hs108|chr3 ( 624) 1826 404.7 1e-112 >>CCDS2875.1 ACTR8 gene_id:93973|Hs108|chr3 (624 aa) initn: 2173 init1: 1820 opt: 1826 Z-score: 2137.2 bits: 404.7 E(32554): 1e-112 Smith-Waterman score: 2017; 86.7% identity (87.3% similar) in 361 aa overlap (14-329:264-624) 10 20 30 40 pF1KE5 MILMKMGFSGIVVHQESVCATYGSGLSSTCIVDVGDQKTSVCC :::::::::::::::::::::::::::::: CCDS28 LLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSSTCIVDVGDQKTSVCC 240 250 260 270 280 290 50 pF1KE5 VEDGVSHRNTRI------------FSW--------------------------------- :::::::::::. : : CCDS28 VEDGVSHRNTRLCLAYGGSDVSRCFYWLMQRAGFPYRECQLTNKMDCLLLQHLKETFCHL 300 310 320 330 340 350 60 70 80 90 100 110 pF1KE5 NQDISGLQDHEFQIRHPDSPALLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQ .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS28 DQDISGLQDHEFQIRHPDSPALLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQ 360 370 380 390 400 410 120 130 140 150 160 170 pF1KE5 GDPEDPHDEHYLLATQSKQEQSAKATADRKSASKPIGFEGDLRGQSSDLPERLHSQEVDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS28 GDPEDPHDEHYLLATQSKQEQSAKATADRKSASKPIGFEGDLRGQSSDLPERLHSQEVDL 420 430 440 450 460 470 180 190 200 210 220 230 pF1KE5 GSAQGDGLMAGNDSEEALTALMSRKTAISLFEGKALGLDKAILHSIDCCSSDDTKKKMYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS28 GSAQGDGLMAGNDSEEALTALMSRKTAISLFEGKALGLDKAILHSIDCCSSDDTKKKMYS 480 490 500 510 520 530 240 250 260 270 280 290 pF1KE5 SILVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENVDVITRPKDMDPRLIAWKGGAVLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS28 SILVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENVDVITRPKDMDPRLIAWKGGAVLA 540 550 560 570 580 590 300 310 320 pF1KE5 CLDTTQELWIYQREWQRFGVRMLRERAAFVW ::::::::::::::::::::::::::::::: CCDS28 CLDTTQELWIYQREWQRFGVRMLRERAAFVW 600 610 620 329 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 00:47:06 2016 done: Tue Nov 8 00:47:06 2016 Total Scan time: 2.560 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]