FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5548, 400 aa 1>>>pF1KE5548 400 - 400 aa - 400 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9914+/-0.00041; mu= 18.3661+/- 0.025 mean_var=56.5724+/-11.440, 0's: 0 Z-trim(111.4): 28 B-trim: 277 in 1/48 Lambda= 0.170519 statistics sampled from 19956 (19960) to 19956 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.613), E-opt: 0.2 (0.234), width: 16 Scan time: 5.580 The best scores are: opt bits E(85289) NP_004068 (OMIM: 118950) citrate synthase, mitocho ( 466) 2695 671.4 1.3e-192 >>NP_004068 (OMIM: 118950) citrate synthase, mitochondri (466 aa) initn: 2695 init1: 2695 opt: 2695 Z-score: 3579.2 bits: 671.4 E(85289): 1.3e-192 Smith-Waterman score: 2695; 100.0% identity (100.0% similar) in 400 aa overlap (1-400:67-466) 10 20 30 pF1KE5 MMYGGMRGMKGLVYETSVLDPDEGIRFRGF :::::::::::::::::::::::::::::: NP_004 LADLIPKEQARIKTFRQQHGKTVVGQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGF 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE5 SIPECQKLLPKAKGGEEPLPEGLFWLLVTGHIPTEEQVSWLSKEWAKRAALPSHVVTMLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 SIPECQKLLPKAKGGEEPLPEGLFWLLVTGHIPTEEQVSWLSKEWAKRAALPSHVVTMLD 100 110 120 130 140 150 100 110 120 130 140 150 pF1KE5 NFPTNLHPMSQLSAAVTALNSESNFARAYAQGISRTKYWELIYEDSMDLIAKLPCVAAKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 NFPTNLHPMSQLSAAVTALNSESNFARAYAQGISRTKYWELIYEDSMDLIAKLPCVAAKI 160 170 180 190 200 210 160 170 180 190 200 210 pF1KE5 YRNLYREGSGIGAIDSNLDWSHNFTNMLGYTDHQFTELTRLYLTIHSDHEGGNVSAHTSH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 YRNLYREGSGIGAIDSNLDWSHNFTNMLGYTDHQFTELTRLYLTIHSDHEGGNVSAHTSH 220 230 240 250 260 270 220 230 240 250 260 270 pF1KE5 LVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 LVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTL 280 290 300 310 320 330 280 290 300 310 320 330 pF1KE5 NSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPNDPMFKLVAQLYKIVPNVLLEQGKAKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 NSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPNDPMFKLVAQLYKIVPNVLLEQGKAKN 340 350 360 370 380 390 340 350 360 370 380 390 pF1KE5 PWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 PWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTEG 400 410 420 430 440 450 400 pF1KE5 LMKFVDSKSG :::::::::: NP_004 LMKFVDSKSG 460 400 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 01:42:35 2016 done: Tue Nov 8 01:42:36 2016 Total Scan time: 5.580 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]