FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5548, 400 aa
  1>>>pF1KE5548 400 - 400 aa - 400 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1796+/-0.000928; mu= 17.3715+/- 0.056
 mean_var=57.0352+/-11.394, 0's: 0 Z-trim(104.4): 29  B-trim: 0 in 0/47
 Lambda= 0.169825
 statistics sampled from 7878 (7880) to 7878 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.242), width:  16
 Scan time:  2.150

The best scores are:                                      opt bits E(32554)
CCDS8913.1 CS gene_id:1431|Hs108|chr12             ( 466) 2695 668.6 3.2e-192


>>CCDS8913.1 CS gene_id:1431|Hs108|chr12                  (466 aa)
 initn: 2695 init1: 2695 opt: 2695  Z-score: 3564.4  bits: 668.6 E(32554): 3.2e-192
Smith-Waterman score: 2695; 100.0% identity (100.0% similar) in 400 aa overlap (1-400:67-466)

                                             10        20        30
pF1KE5                               MMYGGMRGMKGLVYETSVLDPDEGIRFRGF
                                     ::::::::::::::::::::::::::::::
CCDS89 LADLIPKEQARIKTFRQQHGKTVVGQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGF
         40        50        60        70        80        90      

               40        50        60        70        80        90
pF1KE5 SIPECQKLLPKAKGGEEPLPEGLFWLLVTGHIPTEEQVSWLSKEWAKRAALPSHVVTMLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 SIPECQKLLPKAKGGEEPLPEGLFWLLVTGHIPTEEQVSWLSKEWAKRAALPSHVVTMLD
        100       110       120       130       140       150      

              100       110       120       130       140       150
pF1KE5 NFPTNLHPMSQLSAAVTALNSESNFARAYAQGISRTKYWELIYEDSMDLIAKLPCVAAKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 NFPTNLHPMSQLSAAVTALNSESNFARAYAQGISRTKYWELIYEDSMDLIAKLPCVAAKI
        160       170       180       190       200       210      

              160       170       180       190       200       210
pF1KE5 YRNLYREGSGIGAIDSNLDWSHNFTNMLGYTDHQFTELTRLYLTIHSDHEGGNVSAHTSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 YRNLYREGSGIGAIDSNLDWSHNFTNMLGYTDHQFTELTRLYLTIHSDHEGGNVSAHTSH
        220       230       240       250       260       270      

              220       230       240       250       260       270
pF1KE5 LVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 LVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTL
        280       290       300       310       320       330      

              280       290       300       310       320       330
pF1KE5 NSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPNDPMFKLVAQLYKIVPNVLLEQGKAKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 NSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPNDPMFKLVAQLYKIVPNVLLEQGKAKN
        340       350       360       370       380       390      

              340       350       360       370       380       390
pF1KE5 PWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 PWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTEG
        400       410       420       430       440       450      

              400
pF1KE5 LMKFVDSKSG
       ::::::::::
CCDS89 LMKFVDSKSG
        460      




400 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:42:34 2016 done: Tue Nov  8 01:42:35 2016
 Total Scan time:  2.150 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]