Result of FASTA (ccds) for
pFN21AE6773
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6773, 600 aa
1>>>pF1KE6773 600 - 600 aa - 600 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.8918+/-0.00103; mu= -3.7638+/- 0.062
mean_var=329.7603+/-68.075, 0's: 0 Z-trim(114.7): 3 B-trim: 246 in 1/51
Lambda= 0.070628
statistics sampled from 15260 (15263) to 15260 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.469), width: 16
Scan time: 4.130
The best scores are: opt bits E(32554)
CCDS55051.1 RSPH4A gene_id:345895|Hs108|chr6 ( 600) 4043 425.6 8.8e-119
CCDS34521.1 RSPH4A gene_id:345895|Hs108|chr6 ( 716) 3718 392.6 9.3e-109
CCDS12675.1 RSPH6A gene_id:81492|Hs108|chr19 ( 717) 1245 140.6 6.7e-33
>>CCDS55051.1 RSPH4A gene_id:345895|Hs108|chr6 (600 aa)
initn: 4043 init1: 4043 opt: 4043 Z-score: 2246.0 bits: 425.6 E(32554): 8.8e-119
Smith-Waterman score: 4043; 100.0% identity (100.0% similar) in 600 aa overlap (1-600:1-600)
10 20 30 40 50 60
pF1KE6 MEDSTSPKQEKENQEELGETRRPWEGKTAASPQYSEPESSEPLEAKQGPETGRQSRSSRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MEDSTSPKQEKENQEELGETRRPWEGKTAASPQYSEPESSEPLEAKQGPETGRQSRSSRP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 WSPQSRAKTPLGGPAGPETSSPAPVSPREPSSSPSPLAPARQDLAAPPQSDRTTSVIPEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 WSPQSRAKTPLGGPAGPETSSPAPVSPREPSSSPSPLAPARQDLAAPPQSDRTTSVIPEA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 GTPYPDPLEQSSDKRESTPHHTSQSEGNTFQQSQQPKPHLCGRRDVSYNNAKQKELRFDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GTPYPDPLEQSSDKRESTPHHTSQSEGNTFQQSQQPKPHLCGRRDVSYNNAKQKELRFDV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 FQEEDSNSDYDLQQPAPGGSEVAPSMLEITIQNAKAYLLKTSSNSGFNLYDHLSNMLTKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FQEEDSNSDYDLQQPAPGGSEVAPSMLEITIQNAKAYLLKTSSNSGFNLYDHLSNMLTKI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 LNERPENAVDIFENISQDVKMAHFSKKFDALQNENELLPTYEIAEKQKALFLQGHLEGVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LNERPENAVDIFENISQDVKMAHFSKKFDALQNENELLPTYEIAEKQKALFLQGHLEGVD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 QELEDEIAENALPNVMESAFYFEQAGVGLGTDETYRIFLALKQLTDTHPIQRCRFWGKIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QELEDEIAENALPNVMESAFYFEQAGVGLGTDETYRIFLALKQLTDTHPIQRCRFWGKIL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 GLEMNYIVAEVEFREGEDEEEVEEEDVAEERDNGESEAHEDEEDELPKSFYKAPQAIPKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GLEMNYIVAEVEFREGEDEEEVEEEDVAEERDNGESEAHEDEEDELPKSFYKAPQAIPKE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE6 ESRTGANKYVYFVCNEPGRPWVKLPPVIPAQIVIARKIKKFFTGRLDAPIISYPPFPGNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ESRTGANKYVYFVCNEPGRPWVKLPPVIPAQIVIARKIKKFFTGRLDAPIISYPPFPGNE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE6 SNYLRAQIARISAGTHVSPLGFYQFGEEEGEEEEEAEGGRNSFEENPDFEGIQVIDLVES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SNYLRAQIARISAGTHVSPLGFYQFGEEEGEEEEEAEGGRNSFEENPDFEGIQVIDLVES
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE6 LSNWVHHVQHILSQRFRIYPPGQHGYPQISFHNMLLQSFNPTFGLEHMPSPMAKSLKIST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LSNWVHHVQHILSQRFRIYPPGQHGYPQISFHNMLLQSFNPTFGLEHMPSPMAKSLKIST
550 560 570 580 590 600
>>CCDS34521.1 RSPH4A gene_id:345895|Hs108|chr6 (716 aa)
initn: 3718 init1: 3718 opt: 3718 Z-score: 2066.0 bits: 392.6 E(32554): 9.3e-109
Smith-Waterman score: 3718; 100.0% identity (100.0% similar) in 554 aa overlap (1-554:1-554)
10 20 30 40 50 60
pF1KE6 MEDSTSPKQEKENQEELGETRRPWEGKTAASPQYSEPESSEPLEAKQGPETGRQSRSSRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MEDSTSPKQEKENQEELGETRRPWEGKTAASPQYSEPESSEPLEAKQGPETGRQSRSSRP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 WSPQSRAKTPLGGPAGPETSSPAPVSPREPSSSPSPLAPARQDLAAPPQSDRTTSVIPEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 WSPQSRAKTPLGGPAGPETSSPAPVSPREPSSSPSPLAPARQDLAAPPQSDRTTSVIPEA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 GTPYPDPLEQSSDKRESTPHHTSQSEGNTFQQSQQPKPHLCGRRDVSYNNAKQKELRFDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GTPYPDPLEQSSDKRESTPHHTSQSEGNTFQQSQQPKPHLCGRRDVSYNNAKQKELRFDV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 FQEEDSNSDYDLQQPAPGGSEVAPSMLEITIQNAKAYLLKTSSNSGFNLYDHLSNMLTKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FQEEDSNSDYDLQQPAPGGSEVAPSMLEITIQNAKAYLLKTSSNSGFNLYDHLSNMLTKI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE6 LNERPENAVDIFENISQDVKMAHFSKKFDALQNENELLPTYEIAEKQKALFLQGHLEGVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LNERPENAVDIFENISQDVKMAHFSKKFDALQNENELLPTYEIAEKQKALFLQGHLEGVD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE6 QELEDEIAENALPNVMESAFYFEQAGVGLGTDETYRIFLALKQLTDTHPIQRCRFWGKIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QELEDEIAENALPNVMESAFYFEQAGVGLGTDETYRIFLALKQLTDTHPIQRCRFWGKIL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE6 GLEMNYIVAEVEFREGEDEEEVEEEDVAEERDNGESEAHEDEEDELPKSFYKAPQAIPKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GLEMNYIVAEVEFREGEDEEEVEEEDVAEERDNGESEAHEDEEDELPKSFYKAPQAIPKE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE6 ESRTGANKYVYFVCNEPGRPWVKLPPVIPAQIVIARKIKKFFTGRLDAPIISYPPFPGNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ESRTGANKYVYFVCNEPGRPWVKLPPVIPAQIVIARKIKKFFTGRLDAPIISYPPFPGNE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE6 SNYLRAQIARISAGTHVSPLGFYQFGEEEGEEEEEAEGGRNSFEENPDFEGIQVIDLVES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SNYLRAQIARISAGTHVSPLGFYQFGEEEGEEEEEAEGGRNSFEENPDFEGIQVIDLVES
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE6 LSNWVHHVQHILSQRFRIYPPGQHGYPQISFHNMLLQSFNPTFGLEHMPSPMAKSLKIST
::::::::::::::
CCDS34 LSNWVHHVQHILSQGRCNWFNSIQKNEEEEEEEDEEKDDSDYIEQEVGLPLLTPISEDLE
550 560 570 580 590 600
>>CCDS12675.1 RSPH6A gene_id:81492|Hs108|chr19 (717 aa)
initn: 1504 init1: 810 opt: 1245 Z-score: 704.1 bits: 140.6 E(32554): 6.7e-33
Smith-Waterman score: 1572; 48.3% identity (73.4% similar) in 549 aa overlap (42-554:8-551)
20 30 40 50 60 70
pF1KE6 ENQEELGETRRPWEGKTAASPQYSEPESSEPLEAKQGPETGRQSRSSRPWSPQSRAKTPL
: . : : : :..:. ...:..
CCDS12 MGDLPPYPERPAQQPPGRRTSQASQRRHSRDQAQALA
10 20 30
80 90 100 110 120
pF1KE6 GGPAGPETSSPAPVSPRE-PSSSPSPLAPARQDLAAPP--QSD--RTTSV-IPEAGTPYP
. : : .. : . :. :. : ...: : :.. : .. : ..: .:
CCDS12 ADPE--ERQQIPPDAQRNAPGWSQRGSLSQQENLLMPQVFQAEEARLGGMEYPSVNTGFP
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE6 DPLEQSSDKRESTPHHTSQSEGNTFQQSQQPKPHLCGRRDVSYNNAKQKEL-RFDVFQEE
. .. . . :: . . . . .:. :: . : . : .... . : .:...: .
CCDS12 SEFQPQPYSDESRMQVAELTTSLMLQRLQQGQSSLFQQLDPTFQEPPVNPLGQFNLYQTD
100 110 120 130 140 150
190 200 210 220
pF1KE6 D-----SNSDYDLQQPA----PG-------GSEVA-PSMLEITIQNAKAYLLKTSSNSGF
. ... : ..:: :. ...: : ::...::::::::.:: : .
CCDS12 QFSEGAQHGPYIRDDPALQFLPSELGFPHYSAQVPEPEPLELAVQNAKAYLLQTSINCDL
160 170 180 190 200 210
230 240 250 260 270 280
pF1KE6 NLYDHLSNMLTKILNERPENAVDIFENISQDVKMAHFSKKFDALQNENELLPTYEIAEKQ
.::.:: :.::::::.:::. ....:.... .. : :.:.:... :. :::..::::
CCDS12 SLYEHLVNLLTKILNQRPEDPLSVLESLNRTTQWEWFHPKLDTLRDDPEMQPTYKMAEKQ
220 230 240 250 260 270
290 300 310 320 330 340
pF1KE6 KALFLQ--GHLEGVDQELEDEIAENALPNVMESAFYFEQAGVGLGTDETYRIFLALKQLT
:::: . : :: .::.:.:..:. .::.::.:::::::::::..::..:::::.:::.
CCDS12 KALFTRSGGGTEG-EQEMEEEVGETPVPNIMETAFYFEQAGVGLSSDESFRIFLAMKQLV
280 290 300 310 320 330
350 360 370 380 390 400
pF1KE6 DTHPIQRCRFWGKILGLEMNYIVAEVEFREGEDEEEVEEEDVAEERDNGES-EAH---ED
. .::. :::::::::.. .:.:::::::::: ::.:::.: : ..:: ::: :
CCDS12 EQQPIHTCRFWGKILGIKRSYLVAEVEFREGE--EEAEEEEVEEMTEGGEVMEAHGEEEG
340 350 360 370 380 390
410 420 430 440 450
pF1KE6 EEDE------LPKSFYKAPQAIPKEESRTGANKYVYFVCNEPGRPWVKLPPVIPAQIVIA
:::: .::: .: : .:::::::.:::::.:::::::: ::..:: : ::::: :
CCDS12 EEDEEKAVDIVPKSVWKPPPVIPKEESRSGANKYLYFVCNEPGLPWTRLPHVTPAQIVNA
400 410 420 430 440 450
460 470 480 490 500 510
pF1KE6 RKIKKFFTGRLDAPIISYPPFPGNESNYLRAQIARISAGTHVSPLGFYQFGEEEGEEEEE
::::::::: ::.:..:::::::::.::::::::::::.:.:::::::::.::::.::::
CCDS12 RKIKKFFTGYLDTPVVSYPPFPGNEANYLRAQIARISAATQVSPLGFYQFSEEEGDEEEE
460 470 480 490 500 510
520 530 540 550 560 570
pF1KE6 AEGGRNSFEENPDFEGIQVIDLVESLSNWVHHVQHILSQRFRIYPPGQHGYPQISFHNML
. .::.:.::::::::: :..::.:..:::::.:::: :
CCDS12 GGAGRDSYEENPDFEGIPVLELVDSMANWVHHTQHILPQGRCTWVNPLQKTEEEEDLGEE
520 530 540 550 560 570
580 590 600
pF1KE6 LQSFNPTFGLEHMPSPMAKSLKIST
CCDS12 EEKADEGPEEVEQEVGPPLLTPLSEDAEIMHLAPWTTRLSCSLCPQYSVAVVRSNLWPGA
580 590 600 610 620 630
600 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 16:14:41 2016 done: Tue Nov 8 16:14:42 2016
Total Scan time: 4.130 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]