Result of FASTA (ccds) for
pFN21AE6195
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6195, 134 aa
1>>>pF1KE6195 134 - 134 aa - 134 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2754+/-0.000714; mu= 10.4208+/- 0.043
mean_var=55.8855+/-11.111, 0's: 0 Z-trim(107.6): 9 B-trim: 0 in 0/51
Lambda= 0.171563
statistics sampled from 9649 (9653) to 9649 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.297), width: 16
Scan time: 1.110
The best scores are: opt bits E(32554)
CCDS14436.2 MAGT1 gene_id:84061|Hs108|chrX ( 367) 881 225.9 1.5e-59
CCDS5993.1 TUSC3 gene_id:7991|Hs108|chr8 ( 347) 560 146.5 1.2e-35
CCDS5994.1 TUSC3 gene_id:7991|Hs108|chr8 ( 348) 560 146.5 1.2e-35
>>CCDS14436.2 MAGT1 gene_id:84061|Hs108|chrX (367 aa)
initn: 881 init1: 881 opt: 881 Z-score: 1182.4 bits: 225.9 E(32554): 1.5e-59
Smith-Waterman score: 881; 97.7% identity (100.0% similar) in 133 aa overlap (1-133:33-165)
10 20 30
pF1KE6 MAARWRFWCVSVTMVVALLIVCDVPSASAQ
::::::::::::::::::::::::::::::
CCDS14 KGKGPICLFSRPTLRPSRSKVSLIEGRGANMAARWRFWCVSVTMVVALLIVCDVPSASAQ
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE6 RKKEMVLSEKVSQLMEWTNKRPVIRMNGDKFRRLVKAPPRNYSVIVMFTALQLHRQCVVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RKKEMVLSEKVSQLMEWTNKRPVIRMNGDKFRRLVKAPPRNYSVIVMFTALQLHRQCVVC
70 80 90 100 110 120
100 110 120 130
pF1KE6 KQADEEFQILANSWRYSSAFTNRIFFAMVDFDEGSDVFQMFQVF
::::::::::::::::::::::::::::::::::::::::...
CCDS14 KQADEEFQILANSWRYSSAFTNRIFFAMVDFDEGSDVFQMLNMNSAPTFINFPAKGKPKR
130 140 150 160 170 180
CCDS14 GDTYELQVRGFSAEQIARWIADRTDVNIRVIRPPNYAGPLMLGLLLAVIGGLVYLRRSNM
190 200 210 220 230 240
>>CCDS5993.1 TUSC3 gene_id:7991|Hs108|chr8 (347 aa)
initn: 550 init1: 550 opt: 560 Z-score: 753.4 bits: 146.5 E(32554): 1.2e-35
Smith-Waterman score: 560; 62.6% identity (90.2% similar) in 123 aa overlap (11-133:24-145)
10 20 30 40
pF1KE6 MAARWRFWCVSVTMVVALLIVCDVPSASAQRKKEMVLSEKVSQLMEW
: ... ::..: . ...:.::: .:.::: :::::
CCDS59 MGARGAPSRRRQAGRRLRYLPTGSFPFLLLLLLLC-IQLGGGQKKKENLLAEKVEQLMEW
10 20 30 40 50
50 60 70 80 90 100
pF1KE6 TNKRPVIRMNGDKFRRLVKAPPRNYSVIVMFTALQLHRQCVVCKQADEEFQILANSWRYS
...: ..::::::::...::::::::.:::::::: .::: ::.::.::.::::::::::
CCDS59 SSRRSIFRMNGDKFRKFIKAPPRNYSMIVMFTALQPQRQCSVCRQANEEYQILANSWRYS
60 70 80 90 100 110
110 120 130
pF1KE6 SAFTNRIFFAMVDFDEGSDVFQMFQVF
::: :..::.:::.:::.::::....
CCDS59 SAFCNKLFFSMVDYDEGTDVFQQLNMNSAPTFMHFPPKGRPKRADTFDLQRIGFAAEQLA
120 130 140 150 160 170
>>CCDS5994.1 TUSC3 gene_id:7991|Hs108|chr8 (348 aa)
initn: 550 init1: 550 opt: 560 Z-score: 753.3 bits: 146.5 E(32554): 1.2e-35
Smith-Waterman score: 560; 62.6% identity (90.2% similar) in 123 aa overlap (11-133:24-145)
10 20 30 40
pF1KE6 MAARWRFWCVSVTMVVALLIVCDVPSASAQRKKEMVLSEKVSQLMEW
: ... ::..: . ...:.::: .:.::: :::::
CCDS59 MGARGAPSRRRQAGRRLRYLPTGSFPFLLLLLLLC-IQLGGGQKKKENLLAEKVEQLMEW
10 20 30 40 50
50 60 70 80 90 100
pF1KE6 TNKRPVIRMNGDKFRRLVKAPPRNYSVIVMFTALQLHRQCVVCKQADEEFQILANSWRYS
...: ..::::::::...::::::::.:::::::: .::: ::.::.::.::::::::::
CCDS59 SSRRSIFRMNGDKFRKFIKAPPRNYSMIVMFTALQPQRQCSVCRQANEEYQILANSWRYS
60 70 80 90 100 110
110 120 130
pF1KE6 SAFTNRIFFAMVDFDEGSDVFQMFQVF
::: :..::.:::.:::.::::....
CCDS59 SAFCNKLFFSMVDYDEGTDVFQQLNMNSAPTFMHFPPKGRPKRADTFDLQRIGFAAEQLA
120 130 140 150 160 170
134 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 10:15:05 2016 done: Tue Nov 8 10:15:05 2016
Total Scan time: 1.110 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]