FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6576, 107 aa 1>>>pF1KE6576 107 - 107 aa - 107 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0282+/-0.000239; mu= 12.3889+/- 0.015 mean_var=70.7232+/-14.113, 0's: 0 Z-trim(123.0): 63 B-trim: 197 in 1/54 Lambda= 0.152508 statistics sampled from 42102 (42165) to 42102 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.839), E-opt: 0.2 (0.494), width: 16 Scan time: 4.280 The best scores are: opt bits E(85289) NP_001242975 (OMIM: 614297,614298,615043) protein ( 107) 740 170.3 5.5e-43 NP_001242976 (OMIM: 614297,614298,615043) protein ( 141) 636 147.5 5.2e-36 NP_113636 (OMIM: 614297,614298,615043) protein C19 ( 141) 636 147.5 5.2e-36 NP_001026896 (OMIM: 614297,614298,615043) protein ( 152) 636 147.5 5.5e-36 NP_001269860 (OMIM: 614297,614298,615043) protein ( 77) 216 54.9 2.2e-08 NP_001269858 (OMIM: 614297,614298,615043) protein ( 77) 216 54.9 2.2e-08 NP_001269859 (OMIM: 614297,614298,615043) protein ( 77) 216 54.9 2.2e-08 >>NP_001242975 (OMIM: 614297,614298,615043) protein C19o (107 aa) initn: 740 init1: 740 opt: 740 Z-score: 892.8 bits: 170.3 E(85289): 5.5e-43 Smith-Waterman score: 740; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107) 10 20 30 40 50 60 pF1KE6 MTIMVEDIMKLLCSLSGERKMKAAVKHSGKGALVTGAMAFVGGLVGGPPGLAVGGAVGGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MTIMVEDIMKLLCSLSGERKMKAAVKHSGKGALVTGAMAFVGGLVGGPPGLAVGGAVGGL 10 20 30 40 50 60 70 80 90 100 pF1KE6 LGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAAIIRPCSSSCWPCW ::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAAIIRPCSSSCWPCW 70 80 90 100 >>NP_001242976 (OMIM: 614297,614298,615043) protein C19o (141 aa) initn: 636 init1: 636 opt: 636 Z-score: 767.4 bits: 147.5 E(85289): 5.2e-36 Smith-Waterman score: 636; 100.0% identity (100.0% similar) in 97 aa overlap (1-97:1-97) 10 20 30 40 50 60 pF1KE6 MTIMVEDIMKLLCSLSGERKMKAAVKHSGKGALVTGAMAFVGGLVGGPPGLAVGGAVGGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MTIMVEDIMKLLCSLSGERKMKAAVKHSGKGALVTGAMAFVGGLVGGPPGLAVGGAVGGL 10 20 30 40 50 60 70 80 90 100 pF1KE6 LGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAAIIRPCSSSCWPCW ::::::::::::::::::::::::::::::::::::: NP_001 LGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAAIIRHLEWTDAVQLTALVMGSEALQQQ 70 80 90 100 110 120 NP_001 LLAMLVNYVTKELRAEIQYDD 130 140 >>NP_113636 (OMIM: 614297,614298,615043) protein C19orf1 (141 aa) initn: 636 init1: 636 opt: 636 Z-score: 767.4 bits: 147.5 E(85289): 5.2e-36 Smith-Waterman score: 636; 100.0% identity (100.0% similar) in 97 aa overlap (1-97:1-97) 10 20 30 40 50 60 pF1KE6 MTIMVEDIMKLLCSLSGERKMKAAVKHSGKGALVTGAMAFVGGLVGGPPGLAVGGAVGGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_113 MTIMVEDIMKLLCSLSGERKMKAAVKHSGKGALVTGAMAFVGGLVGGPPGLAVGGAVGGL 10 20 30 40 50 60 70 80 90 100 pF1KE6 LGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAAIIRPCSSSCWPCW ::::::::::::::::::::::::::::::::::::: NP_113 LGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAAIIRHLEWTDAVQLTALVMGSEALQQQ 70 80 90 100 110 120 NP_113 LLAMLVNYVTKELRAEIQYDD 130 140 >>NP_001026896 (OMIM: 614297,614298,615043) protein C19o (152 aa) initn: 636 init1: 636 opt: 636 Z-score: 767.0 bits: 147.5 E(85289): 5.5e-36 Smith-Waterman score: 636; 100.0% identity (100.0% similar) in 97 aa overlap (1-97:12-108) 10 20 30 40 pF1KE6 MTIMVEDIMKLLCSLSGERKMKAAVKHSGKGALVTGAMAFVGGLVGGPP ::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MERLKSHKPATMTIMVEDIMKLLCSLSGERKMKAAVKHSGKGALVTGAMAFVGGLVGGPP 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE6 GLAVGGAVGGLLGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAAIIRPCSSSCWPCW :::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GLAVGGAVGGLLGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAAIIRHLEWTDAVQLTA 70 80 90 100 110 120 NP_001 LVMGSEALQQQLLAMLVNYVTKELRAEIQYDD 130 140 150 >>NP_001269860 (OMIM: 614297,614298,615043) protein C19o (77 aa) initn: 216 init1: 216 opt: 216 Z-score: 271.6 bits: 54.9 E(85289): 2.2e-08 Smith-Waterman score: 216; 100.0% identity (100.0% similar) in 33 aa overlap (65-97:1-33) 40 50 60 70 80 90 pF1KE6 TGAMAFVGGLVGGPPGLAVGGAVGGLLGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAA :::::::::::::::::::::::::::::: NP_001 MTSGQFKPVPQILMELPPAEQQRLFNEAAA 10 20 30 100 pF1KE6 IIRPCSSSCWPCW ::: NP_001 IIRHLEWTDAVQLTALVMGSEALQQQLLAMLVNYVTKELRAEIQYDD 40 50 60 70 >>NP_001269858 (OMIM: 614297,614298,615043) protein C19o (77 aa) initn: 216 init1: 216 opt: 216 Z-score: 271.6 bits: 54.9 E(85289): 2.2e-08 Smith-Waterman score: 216; 100.0% identity (100.0% similar) in 33 aa overlap (65-97:1-33) 40 50 60 70 80 90 pF1KE6 TGAMAFVGGLVGGPPGLAVGGAVGGLLGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAA :::::::::::::::::::::::::::::: NP_001 MTSGQFKPVPQILMELPPAEQQRLFNEAAA 10 20 30 100 pF1KE6 IIRPCSSSCWPCW ::: NP_001 IIRHLEWTDAVQLTALVMGSEALQQQLLAMLVNYVTKELRAEIQYDD 40 50 60 70 >>NP_001269859 (OMIM: 614297,614298,615043) protein C19o (77 aa) initn: 216 init1: 216 opt: 216 Z-score: 271.6 bits: 54.9 E(85289): 2.2e-08 Smith-Waterman score: 216; 100.0% identity (100.0% similar) in 33 aa overlap (65-97:1-33) 40 50 60 70 80 90 pF1KE6 TGAMAFVGGLVGGPPGLAVGGAVGGLLGAWMTSGQFKPVPQILMELPPAEQQRLFNEAAA :::::::::::::::::::::::::::::: NP_001 MTSGQFKPVPQILMELPPAEQQRLFNEAAA 10 20 30 100 pF1KE6 IIRPCSSSCWPCW ::: NP_001 IIRHLEWTDAVQLTALVMGSEALQQQLLAMLVNYVTKELRAEIQYDD 40 50 60 70 107 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:32:21 2016 done: Tue Nov 8 14:32:21 2016 Total Scan time: 4.280 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]