FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5294, 221 aa
  1>>>pF1KE5294 221 - 221 aa - 221 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3086+/-0.000382; mu= 14.4485+/- 0.024
 mean_var=73.3746+/-14.592, 0's: 0 Z-trim(112.6): 16  B-trim: 0 in 0/51
 Lambda= 0.149727
 statistics sampled from 21527 (21530) to 21527 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.641), E-opt: 0.2 (0.252), width:  16
 Scan time:  6.350

The best scores are:                                      opt bits E(85289)
NP_071451 (OMIM: 182250,606951,615846) interferon- (1025) 1358 302.9 1.3e-81
NP_055129 (OMIM: 609631,616298) probable ATP-depen ( 925)  147 41.3  0.0066


>>NP_071451 (OMIM: 182250,606951,615846) interferon-indu  (1025 aa)
 initn: 1397 init1: 1358 opt: 1358  Z-score: 1586.3  bits: 302.9 E(85289): 1.3e-81
Smith-Waterman score: 1358; 97.2% identity (98.6% similar) in 216 aa overlap (1-216:1-216)

               10        20        30        40        50        60
pF1KE5 MSNGYSTDENFRYLISCFRARVKMYIQVEPVLDYLTFLPAEVKEQIQRTVATSGNMQAVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 MSNGYSTDENFRYLISCFRARVKMYIQVEPVLDYLTFLPAEVKEQIQRTVATSGNMQAVE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LLLSTLEKGVWHLGWTREFVEALRRTGSPLAARYMNPELTDLPSPSFENAHDEYLQLLNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 LLLSTLEKGVWHLGWTREFVEALRRTGSPLAARYMNPELTDLPSPSFENAHDEYLQLLNL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 LQPTLVDKLLVRDVLDKCMEEELLTIEDRNRIAAAENNGNESGVRELLKRIVQKENWFSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_071 LQPTLVDKLLVRDVLDKCMEEELLTIEDRNRIAAAENNGNESGVRELLKRIVQKENWFSA
              130       140       150       160       170       180

              190       200       210       220                    
pF1KE5 FLNVLRQTGNNELVQELTGSDCSESNAGICNFTEEDSSNSA                   
       ::::::::::::::::::::::::::: : :... :                        
NP_071 FLNVLRQTGNNELVQELTGSDCSESNAEIENLSQVDGPQVEEQLLSTTVQPNLEKEVWGM
              190       200       210       220       230       240

NP_071 ENNSSESSFADSSVVSESDTSLAEGSVSCLDESLGHNSNMGSDSGTMGSDSDEENVAARA
              250       260       270       280       290       300

>>NP_055129 (OMIM: 609631,616298) probable ATP-dependent  (925 aa)
 initn:  90 init1:  52 opt: 147  Z-score: 173.1  bits: 41.3 E(85289): 0.0066
Smith-Waterman score: 147; 25.9% identity (59.4% similar) in 170 aa overlap (12-177:6-167)

               10        20        30          40        50        
pF1KE5 MSNGYSTDENFRYLISCFRARVKMYIQVEPVLDYLT--FLPAEVKEQIQRTVATSGNMQA
                  :  .. :.  ..  ..   .:.:..  :   ::.  ::    ..: :.:
NP_055       MTTEQRRSLQAFQDYIRKTLDPTYILSYMAPWFREEEVQ-YIQAEKNNKGPMEA
                     10        20        30         40        50   

       60        70        80        90       100       110        
pF1KE5 VELLLSTLEKGVWHLGWTREFVEALRRTGSPLAARYMNPELTDLPSPSFENAHDEYLQLL
       . :.:. : . . . :: : :..:: ..:   .. :   :  :. .  .:.  .::  ::
NP_055 ATLFLKFLLE-LQEEGWFRGFLDALDHAG--YSGLYEAIESWDFKK--IEKL-EEYRLLL
            60         70        80          90         100        

      120       130       140       150       160       170        
pF1KE5 NLLQPTLVDKLLVRDVLDKCMEEELLTIEDRNRIAAAENNGNESGVRELLKRIVQ--KEN
       . ::: .  ...  :...  . : :.. : .. .    ..:  .:...:.. ...  :::
NP_055 KRLQPEFKTRIIPTDIISD-LSECLINQECEEILQICSTKGMMAGAEKLVECLLRSDKEN
       110       120        130       140       150       160      

        180       190       200       210       220                
pF1KE5 WFSAFLNVLRQTGNNELVQELTGSDCSESNAGICNFTEEDSSNSA               
       :                                                           
NP_055 WPKTLKLALEKERNKFSELWIVEKGIKDVETEDLEDKMETSDIQIFYQEDPECQNLSENS
        170       180       190       200       210       220      




221 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:29:16 2016 done: Mon Nov  7 23:29:17 2016
 Total Scan time:  6.350 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]