FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5294, 221 aa 1>>>pF1KE5294 221 - 221 aa - 221 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6380+/-0.00089; mu= 12.1528+/- 0.053 mean_var=67.3608+/-13.529, 0's: 0 Z-trim(105.6): 19 B-trim: 0 in 0/51 Lambda= 0.156268 statistics sampled from 8500 (8503) to 8500 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.261), width: 16 Scan time: 2.130 The best scores are: opt bits E(32554) CCDS2217.1 IFIH1 gene_id:64135|Hs108|chr2 (1025) 1358 315.2 9.9e-86 >>CCDS2217.1 IFIH1 gene_id:64135|Hs108|chr2 (1025 aa) initn: 1397 init1: 1358 opt: 1358 Z-score: 1652.7 bits: 315.2 E(32554): 9.9e-86 Smith-Waterman score: 1358; 97.2% identity (98.6% similar) in 216 aa overlap (1-216:1-216) 10 20 30 40 50 60 pF1KE5 MSNGYSTDENFRYLISCFRARVKMYIQVEPVLDYLTFLPAEVKEQIQRTVATSGNMQAVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 MSNGYSTDENFRYLISCFRARVKMYIQVEPVLDYLTFLPAEVKEQIQRTVATSGNMQAVE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 LLLSTLEKGVWHLGWTREFVEALRRTGSPLAARYMNPELTDLPSPSFENAHDEYLQLLNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 LLLSTLEKGVWHLGWTREFVEALRRTGSPLAARYMNPELTDLPSPSFENAHDEYLQLLNL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 LQPTLVDKLLVRDVLDKCMEEELLTIEDRNRIAAAENNGNESGVRELLKRIVQKENWFSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 LQPTLVDKLLVRDVLDKCMEEELLTIEDRNRIAAAENNGNESGVRELLKRIVQKENWFSA 130 140 150 160 170 180 190 200 210 220 pF1KE5 FLNVLRQTGNNELVQELTGSDCSESNAGICNFTEEDSSNSA ::::::::::::::::::::::::::: : :... : CCDS22 FLNVLRQTGNNELVQELTGSDCSESNAEIENLSQVDGPQVEEQLLSTTVQPNLEKEVWGM 190 200 210 220 230 240 CCDS22 ENNSSESSFADSSVVSESDTSLAEGSVSCLDESLGHNSNMGSDSGTMGSDSDEENVAARA 250 260 270 280 290 300 221 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:29:16 2016 done: Mon Nov 7 23:29:16 2016 Total Scan time: 2.130 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]