FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5293, 178 aa 1>>>pF1KE5293 178 - 178 aa - 178 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.8858+/-0.000252; mu= 7.5513+/- 0.016 mean_var=115.1435+/-23.245, 0's: 0 Z-trim(124.7): 199 B-trim: 1979 in 1/51 Lambda= 0.119524 statistics sampled from 46689 (46891) to 46689 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.843), E-opt: 0.2 (0.55), width: 16 Scan time: 5.570 The best scores are: opt bits E(85289) XP_016881664 (OMIM: 605467) PREDICTED: neurotrophi ( 296) 434 84.2 2.1e-16 XP_016881663 (OMIM: 605467) PREDICTED: neurotrophi ( 548) 419 81.7 2.1e-15 NP_057408 (OMIM: 605467) neurotrophin receptor-int ( 548) 419 81.7 2.1e-15 XP_011524629 (OMIM: 605467) PREDICTED: neurotrophi ( 548) 419 81.7 2.1e-15 NP_001265663 (OMIM: 605467) neurotrophin receptor- ( 611) 419 81.8 2.3e-15 NP_057409 (OMIM: 605467) neurotrophin receptor-int ( 621) 419 81.8 2.3e-15 NP_598009 (OMIM: 605467) neurotrophin receptor-int ( 653) 419 81.8 2.4e-15 NP_001253962 (OMIM: 194550) myeloid zinc finger 1 ( 290) 409 79.8 4.1e-15 NP_932172 (OMIM: 194550) myeloid zinc finger 1 iso ( 734) 409 80.1 8.7e-15 NP_003413 (OMIM: 194550) myeloid zinc finger 1 iso ( 734) 409 80.1 8.7e-15 XP_011525566 (OMIM: 194550) PREDICTED: myeloid zin ( 764) 409 80.1 9e-15 XP_005259261 (OMIM: 194550) PREDICTED: myeloid zin ( 775) 409 80.1 9.1e-15 NP_862829 (OMIM: 165260) zinc finger and SCAN doma ( 491) 396 77.7 3e-14 XP_011525219 (OMIM: 165260) PREDICTED: zinc finger ( 491) 396 77.7 3e-14 NP_001308045 (OMIM: 165260) zinc finger and SCAN d ( 491) 396 77.7 3e-14 XP_006723255 (OMIM: 165260) PREDICTED: zinc finger ( 491) 396 77.7 3e-14 XP_016882235 (OMIM: 165260) PREDICTED: zinc finger ( 333) 393 77.1 3.1e-14 NP_001308046 (OMIM: 165260) zinc finger and SCAN d ( 333) 393 77.1 3.1e-14 XP_006718374 (OMIM: 605016) PREDICTED: zinc finger ( 517) 372 73.6 5.4e-13 NP_037382 (OMIM: 605016) zinc finger protein 215 [ ( 517) 372 73.6 5.4e-13 XP_011520954 (OMIM: 608387) PREDICTED: zinc finger ( 285) 359 71.2 1.6e-12 XP_006710939 (OMIM: 611315) PREDICTED: zinc finger ( 989) 366 72.7 1.9e-12 XP_016857727 (OMIM: 611315) PREDICTED: zinc finger (1042) 366 72.8 2e-12 XP_005271228 (OMIM: 611315) PREDICTED: zinc finger (1042) 366 72.8 2e-12 XP_016857726 (OMIM: 611315) PREDICTED: zinc finger (1043) 366 72.8 2e-12 XP_006710937 (OMIM: 611315) PREDICTED: zinc finger (1043) 366 72.8 2e-12 NP_660281 (OMIM: 611315) zinc finger and SCAN doma (1043) 366 72.8 2e-12 NP_001128127 (OMIM: 608387) zinc finger protein 21 ( 459) 359 71.3 2.3e-12 NP_004211 (OMIM: 608387) zinc finger protein 213 [ ( 459) 359 71.3 2.3e-12 XP_006720895 (OMIM: 604191) PREDICTED: zinc finger ( 644) 361 71.8 2.4e-12 XP_006720894 (OMIM: 604191) PREDICTED: zinc finger ( 670) 361 71.8 2.5e-12 NP_005732 (OMIM: 604191) zinc finger protein 263 [ ( 683) 361 71.8 2.5e-12 XP_011520646 (OMIM: 604191) PREDICTED: zinc finger ( 683) 361 71.8 2.5e-12 XP_016868074 (OMIM: 601261) PREDICTED: zinc finger ( 450) 358 71.2 2.6e-12 XP_006716176 (OMIM: 601261) PREDICTED: zinc finger ( 473) 358 71.2 2.7e-12 NP_666019 (OMIM: 601261) zinc finger and SCAN doma ( 473) 358 71.2 2.7e-12 XP_005250625 (OMIM: 601261) PREDICTED: zinc finger ( 473) 358 71.2 2.7e-12 XP_016868073 (OMIM: 601261) PREDICTED: zinc finger ( 473) 358 71.2 2.7e-12 XP_011529614 (OMIM: 300627) PREDICTED: zinc finger ( 518) 354 70.5 4.7e-12 NP_689908 (OMIM: 300627) zinc finger protein 449 [ ( 518) 354 70.5 4.7e-12 XP_006711901 (OMIM: 613911) PREDICTED: zinc finger ( 381) 344 68.7 1.2e-11 NP_001316662 (OMIM: 613911) zinc finger protein 49 ( 386) 344 68.7 1.2e-11 XP_016858082 (OMIM: 613911) PREDICTED: zinc finger ( 405) 344 68.7 1.3e-11 XP_011542618 (OMIM: 613911) PREDICTED: zinc finger ( 412) 344 68.7 1.3e-11 XP_011542617 (OMIM: 613911) PREDICTED: zinc finger ( 427) 344 68.7 1.3e-11 XP_011542616 (OMIM: 613911) PREDICTED: zinc finger ( 427) 344 68.7 1.3e-11 XP_016858081 (OMIM: 613911) PREDICTED: zinc finger ( 443) 344 68.7 1.4e-11 NP_116141 (OMIM: 613911) zinc finger protein 496 i ( 587) 344 68.8 1.7e-11 XP_011542614 (OMIM: 613911) PREDICTED: zinc finger ( 618) 344 68.8 1.8e-11 XP_016858079 (OMIM: 613911) PREDICTED: zinc finger ( 618) 344 68.8 1.8e-11 >>XP_016881664 (OMIM: 605467) PREDICTED: neurotrophin re (296 aa) initn: 411 init1: 411 opt: 434 Z-score: 415.6 bits: 84.2 E(85289): 2.1e-16 Smith-Waterman score: 434; 55.6% identity (72.2% similar) in 133 aa overlap (19-144:143-273) 10 20 30 40 pF1KE5 MLPRPKAPASPRRPQTPTPSEQDADPGPASPRDTEAQRLRFRQFQYHV :::: . : : : :: : :::::.:. XP_016 VLTLNQEVAGPRNAQIQALYAEDGSLSADAPSEQVQQQGK-HPGDPEAARQRFRQFRYKD 120 130 140 150 160 170 50 60 70 80 90 100 pF1KE5 ASGPHLALGQLWTLCRQWLRPEARSKEQMLELLVLEQFLGALPSKMRTWVQSQGPRSCRE .::. :: :: ::.:::.:.::::::.:::::::::::::: :.::::.:: :..:.: XP_016 MTGPREALDQLRELCHQWLQPKARSKEQILELLVLEQFLGALPVKLRTWVESQHPENCQE 180 190 200 210 220 230 110 120 130 140 150 160 pF1KE5 AASLVEDLTQMCQQEGERRR------LRAPGR-ARGPDVSEDRTALLPAHIAPTPARPLP ...::: .: : ..:: :. : : ::: .::: XP_016 VVALVEGVTWMSEEEGASDLPGCGCGLQPGGVGAAGPD-TEDRVPRCDAGDLWAPGLCGV 240 250 260 270 280 290 170 pF1KE5 TSKPLLPRGCVFNYFYI XP_016 GDYTGK >>XP_016881663 (OMIM: 605467) PREDICTED: neurotrophin re (548 aa) initn: 411 init1: 389 opt: 419 Z-score: 397.6 bits: 81.7 E(85289): 2.1e-15 Smith-Waterman score: 419; 61.0% identity (80.0% similar) in 105 aa overlap (19-123:38-141) 10 20 30 40 pF1KE5 MLPRPKAPASPRRPQTPTPSEQDADPGPASPRDTEAQRLRFRQFQYHV :::: . : : : :: : :::::.:. XP_016 VLTLNQEVAGPRNAQIQALYAEDGSLSADAPSEQVQQQGK-HPGDPEAARQRFRQFRYKD 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE5 ASGPHLALGQLWTLCRQWLRPEARSKEQMLELLVLEQFLGALPSKMRTWVQSQGPRSCRE .::. :: :: ::.:::.:.::::::.:::::::::::::: :.::::.:: :..:.: XP_016 MTGPREALDQLRELCHQWLQPKARSKEQILELLVLEQFLGALPVKLRTWVESQHPENCQE 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE5 AASLVEDLTQMCQQEGERRRLRAPGRARGPDVSEDRTALLPAHIAPTPARPLPTSKPLLP ...::: .: : ..: XP_016 VVALVEGVTWMSEEEVLPAGQPAEGTTCCLEVTAQQEEKQEDAAICPVTVLPEEPVTFQD 130 140 150 160 170 180 >>NP_057408 (OMIM: 605467) neurotrophin receptor-interac (548 aa) initn: 411 init1: 389 opt: 419 Z-score: 397.6 bits: 81.7 E(85289): 2.1e-15 Smith-Waterman score: 419; 61.0% identity (80.0% similar) in 105 aa overlap (19-123:38-141) 10 20 30 40 pF1KE5 MLPRPKAPASPRRPQTPTPSEQDADPGPASPRDTEAQRLRFRQFQYHV :::: . : : : :: : :::::.:. NP_057 VLTLNQEVAGPRNAQIQALYAEDGSLSADAPSEQVQQQGK-HPGDPEAARQRFRQFRYKD 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE5 ASGPHLALGQLWTLCRQWLRPEARSKEQMLELLVLEQFLGALPSKMRTWVQSQGPRSCRE .::. :: :: ::.:::.:.::::::.:::::::::::::: :.::::.:: :..:.: NP_057 MTGPREALDQLRELCHQWLQPKARSKEQILELLVLEQFLGALPVKLRTWVESQHPENCQE 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE5 AASLVEDLTQMCQQEGERRRLRAPGRARGPDVSEDRTALLPAHIAPTPARPLPTSKPLLP ...::: .: : ..: NP_057 VVALVEGVTWMSEEEVLPAGQPAEGTTCCLEVTAQQEEKQEDAAICPVTVLPEEPVTFQD 130 140 150 160 170 180 >>XP_011524629 (OMIM: 605467) PREDICTED: neurotrophin re (548 aa) initn: 411 init1: 389 opt: 419 Z-score: 397.6 bits: 81.7 E(85289): 2.1e-15 Smith-Waterman score: 419; 61.0% identity (80.0% similar) in 105 aa overlap (19-123:38-141) 10 20 30 40 pF1KE5 MLPRPKAPASPRRPQTPTPSEQDADPGPASPRDTEAQRLRFRQFQYHV :::: . : : : :: : :::::.:. XP_011 VLTLNQEVAGPRNAQIQALYAEDGSLSADAPSEQVQQQGK-HPGDPEAARQRFRQFRYKD 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE5 ASGPHLALGQLWTLCRQWLRPEARSKEQMLELLVLEQFLGALPSKMRTWVQSQGPRSCRE .::. :: :: ::.:::.:.::::::.:::::::::::::: :.::::.:: :..:.: XP_011 MTGPREALDQLRELCHQWLQPKARSKEQILELLVLEQFLGALPVKLRTWVESQHPENCQE 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE5 AASLVEDLTQMCQQEGERRRLRAPGRARGPDVSEDRTALLPAHIAPTPARPLPTSKPLLP ...::: .: : ..: XP_011 VVALVEGVTWMSEEEVLPAGQPAEGTTCCLEVTAQQEEKQEDAAICPVTVLPEEPVTFQD 130 140 150 160 170 180 >>NP_001265663 (OMIM: 605467) neurotrophin receptor-inte (611 aa) initn: 389 init1: 389 opt: 419 Z-score: 396.9 bits: 81.8 E(85289): 2.3e-15 Smith-Waterman score: 419; 61.0% identity (80.0% similar) in 105 aa overlap (19-123:101-204) 10 20 30 40 pF1KE5 MLPRPKAPASPRRPQTPTPSEQDADPGPASPRDTEAQRLRFRQFQYHV :::: . : : : :: : :::::.:. NP_001 VLTLNQEVAGPRNAQIQALYAEDGSLSADAPSEQVQQQGK-HPGDPEAARQRFRQFRYKD 80 90 100 110 120 50 60 70 80 90 100 pF1KE5 ASGPHLALGQLWTLCRQWLRPEARSKEQMLELLVLEQFLGALPSKMRTWVQSQGPRSCRE .::. :: :: ::.:::.:.::::::.:::::::::::::: :.::::.:: :..:.: NP_001 MTGPREALDQLRELCHQWLQPKARSKEQILELLVLEQFLGALPVKLRTWVESQHPENCQE 130 140 150 160 170 180 110 120 130 140 150 160 pF1KE5 AASLVEDLTQMCQQEGERRRLRAPGRARGPDVSEDRTALLPAHIAPTPARPLPTSKPLLP ...::: .: : ..: NP_001 VVALVEGVTWMSEEEVLPAGQPAEGTTCCLEVTAQQEEKQEDAAICPVTVLPEEPVTFQD 190 200 210 220 230 240 >>NP_057409 (OMIM: 605467) neurotrophin receptor-interac (621 aa) initn: 389 init1: 389 opt: 419 Z-score: 396.8 bits: 81.8 E(85289): 2.3e-15 Smith-Waterman score: 419; 61.0% identity (80.0% similar) in 105 aa overlap (19-123:111-214) 10 20 30 40 pF1KE5 MLPRPKAPASPRRPQTPTPSEQDADPGPASPRDTEAQRLRFRQFQYHV :::: . : : : :: : :::::.:. NP_057 VLTLNQEVAGPRNAQIQALYAEDGSLSADAPSEQVQQQGK-HPGDPEAARQRFRQFRYKD 90 100 110 120 130 50 60 70 80 90 100 pF1KE5 ASGPHLALGQLWTLCRQWLRPEARSKEQMLELLVLEQFLGALPSKMRTWVQSQGPRSCRE .::. :: :: ::.:::.:.::::::.:::::::::::::: :.::::.:: :..:.: NP_057 MTGPREALDQLRELCHQWLQPKARSKEQILELLVLEQFLGALPVKLRTWVESQHPENCQE 140 150 160 170 180 190 110 120 130 140 150 160 pF1KE5 AASLVEDLTQMCQQEGERRRLRAPGRARGPDVSEDRTALLPAHIAPTPARPLPTSKPLLP ...::: .: : ..: NP_057 VVALVEGVTWMSEEEVLPAGQPAEGTTCCLEVTAQQEEKQEDAAICPVTVLPEEPVTFQD 200 210 220 230 240 250 >>NP_598009 (OMIM: 605467) neurotrophin receptor-interac (653 aa) initn: 389 init1: 389 opt: 419 Z-score: 396.5 bits: 81.8 E(85289): 2.4e-15 Smith-Waterman score: 419; 61.0% identity (80.0% similar) in 105 aa overlap (19-123:143-246) 10 20 30 40 pF1KE5 MLPRPKAPASPRRPQTPTPSEQDADPGPASPRDTEAQRLRFRQFQYHV :::: . : : : :: : :::::.:. NP_598 VLTLNQEVAGPRNAQIQALYAEDGSLSADAPSEQVQQQGK-HPGDPEAARQRFRQFRYKD 120 130 140 150 160 170 50 60 70 80 90 100 pF1KE5 ASGPHLALGQLWTLCRQWLRPEARSKEQMLELLVLEQFLGALPSKMRTWVQSQGPRSCRE .::. :: :: ::.:::.:.::::::.:::::::::::::: :.::::.:: :..:.: NP_598 MTGPREALDQLRELCHQWLQPKARSKEQILELLVLEQFLGALPVKLRTWVESQHPENCQE 180 190 200 210 220 230 110 120 130 140 150 160 pF1KE5 AASLVEDLTQMCQQEGERRRLRAPGRARGPDVSEDRTALLPAHIAPTPARPLPTSKPLLP ...::: .: : ..: NP_598 VVALVEGVTWMSEEEVLPAGQPAEGTTCCLEVTAQQEEKQEDAAICPVTVLPEEPVTFQD 240 250 260 270 280 290 >>NP_001253962 (OMIM: 194550) myeloid zinc finger 1 isof (290 aa) initn: 415 init1: 351 opt: 409 Z-score: 392.4 bits: 79.8 E(85289): 4.1e-15 Smith-Waterman score: 409; 45.9% identity (66.5% similar) in 170 aa overlap (4-165:2-165) 10 20 30 40 50 pF1KE5 MLPRPKAPASPRR--PQTPTPS----EQDADPGPASPRDT--EAQRLRFRQFQYHVASGP :: . .:: : :. : :.. . : :. : :: ::::: :.:. :.:: NP_001 MRPAVLGSPDRAPPEDEGPVMVKLEDSEEEGEAALWDPGPEAARLRFRCFRYEEATGP 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 HLALGQLWTLCRQWLRPEARSKEQMLELLVLEQFLGALPSKMRTWVQSQGPRSCREAASL . ::.:: :::::::::.:::::::::::::::::::: .... ::.: : : .:::.: NP_001 QEALAQLRELCRQWLRPEVRSKEQMLELLVLEQFLGALPPEIQARVQGQRPGSPEEAAAL 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 VEDLTQMCQQEGERRRLRAPGRARGPDVSEDRTALLPAHIAPTPARPLPTSKPLLPRGCV :. : . . : :: . . ...: .: .. . :. . : : :: .: NP_001 VDGLRR--EPGGPRRWVTV--QVQGQEVLSEK--MEPSSFQPLPETEPPTPEPGPKTPPR 120 130 140 150 160 170 pF1KE5 FNYFYI NP_001 TMQESPLGLQVKEESEVTEDSDFLESGPLAATQESVPTLLPEEAQRCGTVLDQIFPHSKT 180 190 200 210 220 230 >>NP_932172 (OMIM: 194550) myeloid zinc finger 1 isoform (734 aa) initn: 379 init1: 351 opt: 409 Z-score: 386.4 bits: 80.1 E(85289): 8.7e-15 Smith-Waterman score: 409; 45.9% identity (66.5% similar) in 170 aa overlap (4-165:2-165) 10 20 30 40 50 pF1KE5 MLPRPKAPASPRR--PQTPTPS----EQDADPGPASPRDT--EAQRLRFRQFQYHVASGP :: . .:: : :. : :.. . : :. : :: ::::: :.:. :.:: NP_932 MRPAVLGSPDRAPPEDEGPVMVKLEDSEEEGEAALWDPGPEAARLRFRCFRYEEATGP 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 HLALGQLWTLCRQWLRPEARSKEQMLELLVLEQFLGALPSKMRTWVQSQGPRSCREAASL . ::.:: :::::::::.:::::::::::::::::::: .... ::.: : : .:::.: NP_932 QEALAQLRELCRQWLRPEVRSKEQMLELLVLEQFLGALPPEIQARVQGQRPGSPEEAAAL 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 VEDLTQMCQQEGERRRLRAPGRARGPDVSEDRTALLPAHIAPTPARPLPTSKPLLPRGCV :. : . . : :: . . ...: .: .. . :. . : : :: .: NP_932 VDGLRR--EPGGPRRWVTV--QVQGQEVLSEK--MEPSSFQPLPETEPPTPEPGPKTPPR 120 130 140 150 160 170 pF1KE5 FNYFYI NP_932 TMQESPLGLQVKEESEVTEDSDFLESGPLAATQESVPTLLPEEAQRCGTVLDQIFPHSKT 180 190 200 210 220 230 >>NP_003413 (OMIM: 194550) myeloid zinc finger 1 isoform (734 aa) initn: 379 init1: 351 opt: 409 Z-score: 386.4 bits: 80.1 E(85289): 8.7e-15 Smith-Waterman score: 409; 45.9% identity (66.5% similar) in 170 aa overlap (4-165:2-165) 10 20 30 40 50 pF1KE5 MLPRPKAPASPRR--PQTPTPS----EQDADPGPASPRDT--EAQRLRFRQFQYHVASGP :: . .:: : :. : :.. . : :. : :: ::::: :.:. :.:: NP_003 MRPAVLGSPDRAPPEDEGPVMVKLEDSEEEGEAALWDPGPEAARLRFRCFRYEEATGP 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 HLALGQLWTLCRQWLRPEARSKEQMLELLVLEQFLGALPSKMRTWVQSQGPRSCREAASL . ::.:: :::::::::.:::::::::::::::::::: .... ::.: : : .:::.: NP_003 QEALAQLRELCRQWLRPEVRSKEQMLELLVLEQFLGALPPEIQARVQGQRPGSPEEAAAL 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 VEDLTQMCQQEGERRRLRAPGRARGPDVSEDRTALLPAHIAPTPARPLPTSKPLLPRGCV :. : . . : :: . . ...: .: .. . :. . : : :: .: NP_003 VDGLRR--EPGGPRRWVTV--QVQGQEVLSEK--MEPSSFQPLPETEPPTPEPGPKTPPR 120 130 140 150 160 170 pF1KE5 FNYFYI NP_003 TMQESPLGLQVKEESEVTEDSDFLESGPLAATQESVPTLLPEEAQRCGTVLDQIFPHSKT 180 190 200 210 220 230 178 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:28:46 2016 done: Mon Nov 7 23:28:47 2016 Total Scan time: 5.570 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]