FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2476, 500 aa 1>>>pF1KE2476 500 - 500 aa - 500 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5218+/-0.000772; mu= 16.4109+/- 0.046 mean_var=59.9970+/-11.951, 0's: 0 Z-trim(107.5): 20 B-trim: 0 in 0/51 Lambda= 0.165581 statistics sampled from 9592 (9609) to 9592 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.295), width: 16 Scan time: 2.610 The best scores are: opt bits E(32554) CCDS1606.1 B3GALNT2 gene_id:148789|Hs108|chr1 ( 500) 3455 833.7 0 CCDS60453.1 B3GALNT2 gene_id:148789|Hs108|chr1 ( 326) 1645 401.3 8.3e-112 CCDS13.1 B3GALT6 gene_id:126792|Hs108|chr1 ( 329) 296 79.1 8.5e-15 CCDS2227.1 B3GALT1 gene_id:8708|Hs108|chr2 ( 326) 270 72.9 6.2e-13 CCDS1383.1 B3GALT2 gene_id:8707|Hs108|chr1 ( 422) 267 72.2 1.3e-12 >>CCDS1606.1 B3GALNT2 gene_id:148789|Hs108|chr1 (500 aa) initn: 3455 init1: 3455 opt: 3455 Z-score: 4454.5 bits: 833.7 E(32554): 0 Smith-Waterman score: 3455; 100.0% identity (100.0% similar) in 500 aa overlap (1-500:1-500) 10 20 30 40 50 60 pF1KE2 MRNWLVLLCPCVLGAALHLWLRLRSPPPACASGAGPADQLALFPQWKSTHYDVVVGVLSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS16 MRNWLVLLCPCVLGAALHLWLRLRSPPPACASGAGPADQLALFPQWKSTHYDVVVGVLSA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 RNNHELRNVIRSTWMRHLLQHPTLSQRVLVKFIIGAHGCEVPVEDREDPYSCKLLNITNP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS16 RNNHELRNVIRSTWMRHLLQHPTLSQRVLVKFIIGAHGCEVPVEDREDPYSCKLLNITNP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 VLNQEIEAFSLSEDTSSGLPEDRVVSVSFRVLYPIVITSLGVFYDANDVGFQRNITVKLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS16 VLNQEIEAFSLSEDTSSGLPEDRVVSVSFRVLYPIVITSLGVFYDANDVGFQRNITVKLY 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 QAEQEEALFIARFSPPSCGVQVNKLWYKPVEQFILPESFEGTIVWESQDLHGLVSRNLHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS16 QAEQEEALFIARFSPPSCGVQVNKLWYKPVEQFILPESFEGTIVWESQDLHGLVSRNLHK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 VTVNDGGGVLRVITAGEGALPHEFLEGVEGVAGGFIYTIQEGDALLHNLHSRPQRLIDHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS16 VTVNDGGGVLRVITAGEGALPHEFLEGVEGVAGGFIYTIQEGDALLHNLHSRPQRLIDHI 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 RNLHEEDALLKEESSIYDDIVFVDVVDTYRNVPAKLLNFYRWTVETTSFNLLLKTDDDCY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS16 RNLHEEDALLKEESSIYDDIVFVDVVDTYRNVPAKLLNFYRWTVETTSFNLLLKTDDDCY 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 IDLEAVFNRIVQKNLDGPNFWWGNFRLNWAVDRTGKWQELEYPSPAYPAFACGSGYVISK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS16 IDLEAVFNRIVQKNLDGPNFWWGNFRLNWAVDRTGKWQELEYPSPAYPAFACGSGYVISK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 DIVKWLASNSGRLKTYQGEDVSMGIWMAAIGPKRYQDSLWLCEKTCETGMLSSPQYSPWE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS16 DIVKWLASNSGRLKTYQGEDVSMGIWMAAIGPKRYQDSLWLCEKTCETGMLSSPQYSPWE 430 440 450 460 470 480 490 500 pF1KE2 LTELWKLKERCGDPCRCQAR :::::::::::::::::::: CCDS16 LTELWKLKERCGDPCRCQAR 490 500 >>CCDS60453.1 B3GALNT2 gene_id:148789|Hs108|chr1 (326 aa) initn: 1640 init1: 1640 opt: 1645 Z-score: 2120.8 bits: 401.3 E(32554): 8.3e-112 Smith-Waterman score: 1735; 86.9% identity (86.9% similar) in 312 aa overlap (10-280:10-321) 10 20 30 pF1KE2 MRNWLVLLCPCVLGAALHLWLRLRSPPPACASGAGPA----------------------- :::::::::::::::::::::::::::: CCDS60 MRNWLVLLCPCVLGAALHLWLRLRSPPPACASGAGPAGGVSLLLPRLECNGAVSAHPNLH 10 20 30 40 50 60 40 50 60 70 pF1KE2 ------------------DQLALFPQWKSTHYDVVVGVLSARNNHELRNVIRSTWMRHLL :::::::::::::::::::::::::::::::::::::::::: CCDS60 LPGSRDSPASASQVAGITDQLALFPQWKSTHYDVVVGVLSARNNHELRNVIRSTWMRHLL 70 80 90 100 110 120 80 90 100 110 120 130 pF1KE2 QHPTLSQRVLVKFIIGAHGCEVPVEDREDPYSCKLLNITNPVLNQEIEAFSLSEDTSSGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 QHPTLSQRVLVKFIIGAHGCEVPVEDREDPYSCKLLNITNPVLNQEIEAFSLSEDTSSGL 130 140 150 160 170 180 140 150 160 170 180 190 pF1KE2 PEDRVVSVSFRVLYPIVITSLGVFYDANDVGFQRNITVKLYQAEQEEALFIARFSPPSCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 PEDRVVSVSFRVLYPIVITSLGVFYDANDVGFQRNITVKLYQAEQEEALFIARFSPPSCG 190 200 210 220 230 240 200 210 220 230 240 250 pF1KE2 VQVNKLWYKPVEQFILPESFEGTIVWESQDLHGLVSRNLHKVTVNDGGGVLRVITAGEGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 VQVNKLWYKPVEQFILPESFEGTIVWESQDLHGLVSRNLHKVTVNDGGGVLRVITAGEGA 250 260 270 280 290 300 260 270 280 290 300 310 pF1KE2 LPHEFLEGVEGVAGGFIYTIQEGDALLHNLHSRPQRLIDHIRNLHEEDALLKEESSIYDD ::::::::::::::::::::: CCDS60 LPHEFLEGVEGVAGGFIYTIQGKFAS 310 320 >>CCDS13.1 B3GALT6 gene_id:126792|Hs108|chr1 (329 aa) initn: 298 init1: 125 opt: 296 Z-score: 379.2 bits: 79.1 E(32554): 8.5e-15 Smith-Waterman score: 296; 28.3% identity (59.6% similar) in 198 aa overlap (305-496:104-301) 280 290 300 310 320 330 pF1KE2 FIYTIQEGDALLHNLHSRPQRLIDHIRNLHEEDALLKEESSIYDDIVFVDVV-DTYRNVP :: :..:.. . :.... .. :.:.:. CCDS13 SVIRSTWLARRGAPGDVWARFAVGTAGLGAEERRALEREQARHGDLLLLPALRDAYENLT 80 90 100 110 120 130 340 350 360 370 380 390 pF1KE2 AKLLNFYRWTVETTSFNLLLKTDDDCYIDLEAVFNRI-VQKNLDGPNFWWGNFRLNWAVD ::.: . : : ..:...::.::: . :.:.. .. ... ..:: : : CCDS13 AKVLAMLAWLDEHVAFEFVLKADDDSFARLDALLAELRAREPARRRRLYWGFFSGRGRVK 140 150 160 170 180 190 400 410 420 430 440 450 pF1KE2 RTGKWQELEYP-SPAYPAFACGSGYVISKDIVKWLASNSGRLKTYQGEDVSMGIWMAAIG :.:.: . : .: :.:::.: :.:..: . :.....::::.: :.: . CCDS13 PGGRWREAAWQLCDYYLPYALGGGYVLSADLVHYLRLSRDYLRAWHSEDVSLGAWLAPVD 200 210 220 230 240 250 460 470 480 490 500 pF1KE2 PKRYQDSLWLCE---KTCETGMLSSPQYSPWELTELWKLKERCGDPCRCQAR .: .: . : . : . .: . . : .. : : : :. CCDS13 VQREHDPRFDTEYRSRGCSNQYLVTHKQSLEDMLEKHATLAREGRLCKREVQLRLSYVYD 260 270 280 290 300 310 CCDS13 WSAPPSQCCQRREGIP 320 >>CCDS2227.1 B3GALT1 gene_id:8708|Hs108|chr2 (326 aa) initn: 258 init1: 110 opt: 270 Z-score: 345.7 bits: 72.9 E(32554): 6.2e-13 Smith-Waterman score: 270; 25.3% identity (61.6% similar) in 190 aa overlap (307-485:127-315) 280 290 300 310 320 330 pF1KE2 YTIQEGDALLHNLHSRPQRLIDHIRNLHEEDALLKEESSIYDDIVFVDVVDTYRNVPAKL . ....::.:. ::. : .:.:.:. : CCDS22 IRETWGDENNFKGIKIATLFLLGKNADPVLNQMVEQESQIFHDIIVEDFIDSYHNLTLKT 100 110 120 130 140 150 340 350 360 370 380 390 pF1KE2 LNFYRWTVETTS-FNLLLKTDDDCYIDLEAVFNRIVQKNLDGPNFWWGNFRLNWAV--DR : .::.. : . ..:::.: ..... .. .... . .. .. .: . : CCDS22 LMGMRWVATFCSKAKYVMKTDSDIFVNMDNLIYKLLKPSTKPRRRYFTGYVINGGPIRDV 160 170 180 190 200 210 400 410 420 430 440 450 pF1KE2 TGKW---QELEYPSPAYPAFACGSGYVISKDIVKWLASNSGRLKTYQGEDVSMGIWMAAI .:: ..: ::. :: : :.::..: :... . ..: . . . ::: .:. . . CCDS22 RSKWYMPRDL-YPDSNYPPFCSGTGYIFSADVAELIYKTSLHTRLLHLEDVYVGLCLRKL 220 230 240 250 260 270 460 470 480 490 500 pF1KE2 GPKRYQDS---LW-LCEKTCE-TGMLSSPQYSPWELTELWKLKERCGDPCRCQAR : . .:.: : . . :. ... : :: :. ..: CCDS22 GIHPFQNSGFNHWKMAYSLCRYRRVITVHQISPEEMHRIWNDMSSKKHLRC 280 290 300 310 320 >>CCDS1383.1 B3GALT2 gene_id:8707|Hs108|chr1 (422 aa) initn: 193 init1: 111 opt: 267 Z-score: 339.9 bits: 72.2 E(32554): 1.3e-12 Smith-Waterman score: 275; 28.7% identity (59.7% similar) in 216 aa overlap (302-500:198-410) 280 290 300 310 320 330 pF1KE2 AGGFIYTIQEGDALLHNLHSRPQRLIDHIRNLHEEDALLKEESSIYDDIVFVDVVDTYRN : . . :.: ::: : ::. . .::: : CCDS13 RAIRQTWGNESLAPGIQITRIFLLGLSIKLNGYLQRAIL-EESRQYHDIIQQEYLDTYYN 170 180 190 200 210 220 340 350 360 370 380 pF1KE2 VPAKLLNFYRWTVE-TTSFNLLLKTDDDCYIDLEAVFNRIVQKNLDGP--NFWWGNFRLN . : : . :.. . ..:::.: ... : ..:.... .: : :.. : . . CCDS13 LTIKTLMGMNWVATYCPHIPYVMKTDSDMFVNTEYLINKLLKPDLP-PRHNYFTGYLMRG 230 240 250 260 270 280 390 400 410 420 430 440 pF1KE2 WAVDRT--GKWQ---ELEYPSPAYPAFACGSGYVISKDIVKWLASNSGRLKTYQGEDVSM .: .:. .:: .: ::: ::.: :.:::.: :... . . : .. . ::: . CCDS13 YAPNRNKDSKWYMPPDL-YPSERYPVFCSGTGYVFSGDLAEKIFKVSLGIRRLHLEDVYV 290 300 310 320 330 340 450 460 470 480 490 pF1KE2 GIWMAAI------GPKRYQDSLW-LCEKTCE-TGMLSSPQYSPWELTELWK-LKERCGDP :: .: . :... . : . ..:. . ...: :..: :: . :. :.. . CCDS13 GICLAKLRIDPVPPPNEFVFNHWRVSYSSCKYSHLITSHQFQPSELIKYWNHLQQNKHNA 350 360 370 380 390 400 500 pF1KE2 CRCQAR : :. CCDS13 CANAAKEKAGRYRHRKLH 410 420 500 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 20:35:47 2016 done: Mon Nov 7 20:35:48 2016 Total Scan time: 2.610 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]