FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5753, 725 aa 1>>>pF1KE5753 725 - 725 aa - 725 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.0196+/-0.000823; mu= 8.0878+/- 0.050 mean_var=142.4953+/-28.831, 0's: 0 Z-trim(112.6): 11 B-trim: 307 in 1/50 Lambda= 0.107442 statistics sampled from 13350 (13354) to 13350 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.41), width: 16 Scan time: 4.080 The best scores are: opt bits E(32554) CCDS7329.2 USP54 gene_id:159195|Hs108|chr10 (1684) 3306 524.3 5.9e-148 >>CCDS7329.2 USP54 gene_id:159195|Hs108|chr10 (1684 aa) initn: 3306 init1: 3306 opt: 3306 Z-score: 2769.8 bits: 524.3 E(32554): 5.9e-148 Smith-Waterman score: 4842; 93.8% identity (93.8% similar) in 757 aa overlap (1-710:913-1669) 10 20 30 pF1KE5 MDTEFGASSFFHSPASCHESHSSLSPESSA :::::::::::::::::::::::::::::: CCDS73 TQAGTLSQPTSEQPIPLQVLLSQEAQLESGMDTEFGASSFFHSPASCHESHSSLSPESSA 890 900 910 920 930 940 40 50 60 70 80 90 pF1KE5 PQHSSPSRSALKLLTSVEVDNIEPSAFHRQGLPKAPGWTEKNSHHSWEPLDAPEGKLQGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 PQHSSPSRSALKLLTSVEVDNIEPSAFHRQGLPKAPGWTEKNSHHSWEPLDAPEGKLQGS 950 960 970 980 990 1000 100 110 120 130 140 150 pF1KE5 RCDNSSCSKLPPQEGRGIAQEQLFQEKKDPANPSPVMPGIATSERGDEHSLGCSPSNSSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 RCDNSSCSKLPPQEGRGIAQEQLFQEKKDPANPSPVMPGIATSERGDEHSLGCSPSNSSA 1010 1020 1030 1040 1050 1060 160 170 180 190 200 210 pF1KE5 QPSLPLYRTCHPIMPVASSFVLHCPDPVQKTNQCLQGQSLKTSLTLKVDRGSEETYRPEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 QPSLPLYRTCHPIMPVASSFVLHCPDPVQKTNQCLQGQSLKTSLTLKVDRGSEETYRPEF 1070 1080 1090 1100 1110 1120 220 230 240 250 260 270 pF1KE5 PSTKGLVRSLAEQFQRMQGVSMRDSTGFKDRSLSGSLRKNSSPSDSKPPFSQGQEKGHWP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 PSTKGLVRSLAEQFQRMQGVSMRDSTGFKDRSLSGSLRKNSSPSDSKPPFSQGQEKGHWP 1130 1140 1150 1160 1170 1180 280 290 300 310 320 330 pF1KE5 WAKQQSSLEGGDRPLSWEESTEHSSLALNSGLPNGETSSGGQPRLAEPDIYQEKLSQVRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 WAKQQSSLEGGDRPLSWEESTEHSSLALNSGLPNGETSSGGQPRLAEPDIYQEKLSQVRD 1190 1200 1210 1220 1230 1240 340 350 360 370 380 390 pF1KE5 VRSKDLGSSTDLGTSLPLDSWVNITRFCDSQLKHGAPRPGMKSSPHDSHTCVTYPERNHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 VRSKDLGSSTDLGTSLPLDSWVNITRFCDSQLKHGAPRPGMKSSPHDSHTCVTYPERNHI 1250 1260 1270 1280 1290 1300 400 410 420 430 440 450 pF1KE5 LLHPHWNQDTEQETSELESLYQASLQASQAGCSGWGQQDTAWHPLSQTGSADGMGRRLHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 LLHPHWNQDTEQETSELESLYQASLQASQAGCSGWGQQDTAWHPLSQTGSADGMGRRLHS 1310 1320 1330 1340 1350 1360 460 470 pF1KE5 AHDPGLSKTSTAEMEHGLHEARTVRTSQ-------------------------------- :::::::::::::::::::::::::::: CCDS73 AHDPGLSKTSTAEMEHGLHEARTVRTSQATPCRGLSRECGEDEQYSAENLRRISRSLSGT 1370 1380 1390 1400 1410 1420 480 490 500 510 520 pF1KE5 ------------HS---SNVRKPLETGHRCSSSSSLPVIHDPSVFLLGPQLYLPQPQFLS :: ::::::::::::::::::::::::::::::::::::::::::: CCDS73 VVSEREEAPVSSHSFDSSNVRKPLETGHRCSSSSSLPVIHDPSVFLLGPQLYLPQPQFLS 1430 1440 1450 1460 1470 1480 530 540 550 560 570 580 pF1KE5 PDVLMPTMAGEPNRLPGTSRSVQQFLAMCDRGETSQGAKYTGRTLNYQSLPHRSRTDNSW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 PDVLMPTMAGEPNRLPGTSRSVQQFLAMCDRGETSQGAKYTGRTLNYQSLPHRSRTDNSW 1490 1500 1510 1520 1530 1540 590 600 610 620 630 640 pF1KE5 APWSETNQHIGTRFLTTPGCNPQLTYTATLPERSKGLQVPHTQSWSDLFHSPSHPPIVHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 APWSETNQHIGTRFLTTPGCNPQLTYTATLPERSKGLQVPHTQSWSDLFHSPSHPPIVHP 1550 1560 1570 1580 1590 1600 650 660 670 680 690 700 pF1KE5 VYPPSSSLHVPLRSAWNSDPVPGSRTPGPRRVDMPPDDDWRQSSYASHSGHRRTVGEGFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 VYPPSSSLHVPLRSAWNSDPVPGSRTPGPRRVDMPPDDDWRQSSYASHSGHRRTVGEGFL 1610 1620 1630 1640 1650 1660 710 720 pF1KE5 FVLSDAPRREQIRARVLQHSQW ::::::: CCDS73 FVLSDAPRREQIRARVLQHSQW 1670 1680 725 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 06:21:49 2016 done: Tue Nov 8 06:21:50 2016 Total Scan time: 4.080 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]