FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6565, 173 aa 1>>>pF1KE6565 173 - 173 aa - 173 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1579+/-0.000356; mu= 13.6579+/- 0.022 mean_var=66.9036+/-13.768, 0's: 0 Z-trim(115.1): 26 B-trim: 919 in 1/52 Lambda= 0.156801 statistics sampled from 25285 (25298) to 25285 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.297), width: 16 Scan time: 4.010 The best scores are: opt bits E(85289) NP_001153773 (OMIM: 274270,612779) dihydropyrimidi ( 173) 1186 276.6 1.3e-74 XP_006710460 (OMIM: 274270,612779) PREDICTED: dihy ( 889) 1115 261.0 3.5e-69 XP_005270619 (OMIM: 274270,612779) PREDICTED: dihy ( 953) 1115 261.1 3.7e-69 NP_000101 (OMIM: 274270,612779) dihydropyrimidine (1025) 1115 261.1 3.9e-69 XP_016855996 (OMIM: 274270,612779) PREDICTED: dihy ( 988) 777 184.6 3.9e-46 >>NP_001153773 (OMIM: 274270,612779) dihydropyrimidine d (173 aa) initn: 1186 init1: 1186 opt: 1186 Z-score: 1460.3 bits: 276.6 E(85289): 1.3e-74 Smith-Waterman score: 1186; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:1-173) 10 20 30 40 50 60 pF1KE6 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATETLILAFSLMNHL ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATETLILAFSLMNHL 130 140 150 160 170 >>XP_006710460 (OMIM: 274270,612779) PREDICTED: dihydrop (889 aa) initn: 1137 init1: 1115 opt: 1115 Z-score: 1363.1 bits: 261.0 E(85289): 3.5e-69 Smith-Waterman score: 1115; 98.8% identity (100.0% similar) in 163 aa overlap (1-163:1-163) 10 20 30 40 50 60 pF1KE6 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATETLILAFSLMNHL :::::::::::::::::::::::::::::::::::::::::.. XP_006 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATEVFKAMSIPQIRNPSLPPPE 130 140 150 160 170 180 XP_006 KMSEAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDV 190 200 210 220 230 240 >>XP_005270619 (OMIM: 274270,612779) PREDICTED: dihydrop (953 aa) initn: 1137 init1: 1115 opt: 1115 Z-score: 1362.7 bits: 261.1 E(85289): 3.7e-69 Smith-Waterman score: 1115; 98.8% identity (100.0% similar) in 163 aa overlap (1-163:1-163) 10 20 30 40 50 60 pF1KE6 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATETLILAFSLMNHL :::::::::::::::::::::::::::::::::::::::::.. XP_005 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATEVFKAMSIPQIRNPSLPPPE 130 140 150 160 170 180 XP_005 KMSEAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDV 190 200 210 220 230 240 >>NP_000101 (OMIM: 274270,612779) dihydropyrimidine dehy (1025 aa) initn: 1137 init1: 1115 opt: 1115 Z-score: 1362.2 bits: 261.1 E(85289): 3.9e-69 Smith-Waterman score: 1115; 98.8% identity (100.0% similar) in 163 aa overlap (1-163:1-163) 10 20 30 40 50 60 pF1KE6 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATETLILAFSLMNHL :::::::::::::::::::::::::::::::::::::::::.. NP_000 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATEVFKAMSIPQIRNPSLPPPE 130 140 150 160 170 180 NP_000 KMSEAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDV 190 200 210 220 230 240 >>XP_016855996 (OMIM: 274270,612779) PREDICTED: dihydrop (988 aa) initn: 866 init1: 777 opt: 777 Z-score: 949.2 bits: 184.6 E(85289): 3.9e-46 Smith-Waterman score: 777; 98.2% identity (100.0% similar) in 113 aa overlap (51-163:14-126) 30 40 50 60 70 80 pF1KE6 RTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFDDIKHTTLGERGALREAMRCL :::::::::::::::::::::::::::::: XP_016 MAPVLSKDSADIENCEKLENNFDDIKHTTLGERGALREAMRCL 10 20 30 40 90 100 110 120 130 140 pF1KE6 KCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDNPLGLTCGMVCPTSDLCVGGC 50 60 70 80 90 100 150 160 170 pF1KE6 NLYATEEGPINIGGLQQFATETLILAFSLMNHL :::::::::::::::::::::.. XP_016 NLYATEEGPINIGGLQQFATEVFKAMSIPQIRNPSLPPPEKMSEAYSAKIALFGAGPASI 110 120 130 140 150 160 173 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:27:29 2016 done: Tue Nov 8 14:27:29 2016 Total Scan time: 4.010 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]