FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6565, 173 aa 1>>>pF1KE6565 173 - 173 aa - 173 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2542+/-0.00079; mu= 13.3306+/- 0.048 mean_var=67.9333+/-13.320, 0's: 0 Z-trim(108.4): 14 B-trim: 42 in 1/48 Lambda= 0.155608 statistics sampled from 10215 (10218) to 10215 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.314), width: 16 Scan time: 1.820 The best scores are: opt bits E(32554) CCDS53346.1 DPYD gene_id:1806|Hs108|chr1 ( 173) 1186 274.6 2.2e-74 CCDS30777.1 DPYD gene_id:1806|Hs108|chr1 (1025) 1115 259.1 5.9e-69 >>CCDS53346.1 DPYD gene_id:1806|Hs108|chr1 (173 aa) initn: 1186 init1: 1186 opt: 1186 Z-score: 1449.0 bits: 274.6 E(32554): 2.2e-74 Smith-Waterman score: 1186; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:1-173) 10 20 30 40 50 60 pF1KE6 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATETLILAFSLMNHL ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATETLILAFSLMNHL 130 140 150 160 170 >>CCDS30777.1 DPYD gene_id:1806|Hs108|chr1 (1025 aa) initn: 1137 init1: 1115 opt: 1115 Z-score: 1351.5 bits: 259.1 E(32554): 5.9e-69 Smith-Waterman score: 1115; 98.8% identity (100.0% similar) in 163 aa overlap (1-163:1-163) 10 20 30 40 50 60 pF1KE6 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 MAPVLSKDSADIESILALNPRTQTHATLCSTSAKKLDKKHWKRNPDKNCFNCEKLENNFD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 DIKHTTLGERGALREAMRCLKCADAPCQKSCPTNLDIKSFITSIANKNYYGAAKMIFSDN 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATETLILAFSLMNHL :::::::::::::::::::::::::::::::::::::::::.. CCDS30 PLGLTCGMVCPTSDLCVGGCNLYATEEGPINIGGLQQFATEVFKAMSIPQIRNPSLPPPE 130 140 150 160 170 180 CCDS30 KMSEAYSAKIALFGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDV 190 200 210 220 230 240 173 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:27:28 2016 done: Tue Nov 8 14:27:28 2016 Total Scan time: 1.820 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]