FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5291, 244 aa
  1>>>pF1KE5291 244 - 244 aa - 244 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9270+/-0.000532; mu= 2.7637+/- 0.033
 mean_var=149.8148+/-30.355, 0's: 0 Z-trim(110.9): 24  B-trim: 394 in 2/53
 Lambda= 0.104784
 statistics sampled from 19330 (19343) to 19330 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.557), E-opt: 0.2 (0.227), width:  16
 Scan time:  4.790

The best scores are:                                      opt bits E(85289)
NP_963906 (OMIM: 609861) inhibitor of nuclear fact ( 350) 1468 233.8   3e-61


>>NP_963906 (OMIM: 609861) inhibitor of nuclear factor k  (350 aa)
 initn: 1468 init1: 1468 opt: 1468  Z-score: 1220.7  bits: 233.8 E(85289): 3e-61
Smith-Waterman score: 1468; 99.6% identity (100.0% similar) in 244 aa overlap (1-244:107-350)

                                             10        20        30
pF1KE5                               MEQLKSFQIIAHLKRLQEEINEVKTWSNRI
                                     ::::::::::::::::::::::::::::::
NP_963 QLLKLETNEFQQLQSKISLISEKWQKSEAIMEQLKSFQIIAHLKRLQEEINEVKTWSNRI
         80        90       100       110       120       130      

               40        50        60        70        80        90
pF1KE5 TEKQDILNNSLTTLSQDITKVDQSTTSMAKDVGLKITSVKTDIRRISGLVTDVISLTDSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_963 TEKQDILNNSLTTLSQDITKVDQSTTSMAKDVGLKITSVKTDIRRISGLVTDVISLTDSV
        140       150       160       170       180       190      

              100       110       120       130       140       150
pF1KE5 QELENKIEKVEKNTVKNIGDLLSSSIDRTATLRKTASENSQRINSVKKTLTELKSDFDKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_963 QELENKIEKVEKNTVKNIGDLLSSSIDRTATLRKTASENSQRINSVKKTLTELKSDFDKH
        200       210       220       230       240       250      

              160       170       180       190       200       210
pF1KE5 TDRFLSLESDRAKVLKTVTFANDLKPKVYNLKKDFSRLEPLVNDLTLRIGRLVTDLLQRE
       ::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_963 TDRFLSLEGDRAKVLKTVTFANDLKPKVYNLKKDFSRLEPLVNDLTLRIGRLVTDLLQRE
        260       270       280       290       300       310      

              220       230       240    
pF1KE5 KEIAFLSEKISNLTIVQAEIKDIKDEIAHISDMN
       ::::::::::::::::::::::::::::::::::
NP_963 KEIAFLSEKISNLTIVQAEIKDIKDEIAHISDMN
        320       330       340       350




244 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:27:36 2016 done: Mon Nov  7 23:27:37 2016
 Total Scan time:  4.790 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]