FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6658, 255 aa 1>>>pF1KE6658 255 - 255 aa - 255 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.8078+/-0.00104; mu= 2.8389+/- 0.062 mean_var=122.2113+/-24.714, 0's: 0 Z-trim(106.9): 29 B-trim: 20 in 1/50 Lambda= 0.116016 statistics sampled from 9229 (9246) to 9229 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.284), width: 16 Scan time: 1.300 The best scores are: opt bits E(32554) CCDS77476.1 CCDC148 gene_id:130940|Hs108|chr2 ( 255) 1672 290.8 6.2e-79 CCDS33304.1 CCDC148 gene_id:130940|Hs108|chr2 ( 591) 1672 290.9 1.3e-78 >>CCDS77476.1 CCDC148 gene_id:130940|Hs108|chr2 (255 aa) initn: 1672 init1: 1672 opt: 1672 Z-score: 1530.6 bits: 290.8 E(32554): 6.2e-79 Smith-Waterman score: 1672; 99.6% identity (100.0% similar) in 255 aa overlap (1-255:1-255) 10 20 30 40 50 60 pF1KE6 MCAASASPDNLVFHMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLKIRKAMLTSKLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 MCAASASPDNLVFHMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLKIRKAMLTSKLS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 KEQTLIKQHKQVWWQEYQRLNEVRCKMESEIKSLLNEENIGNECLCDLTNFEQELSEQQC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 KEQTLIKQHKQVWWQEYQRLNEVRCKMESEIKSLLNEENIGNECLCDLTNFEQELSEQQC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 TYLKNVINPIQQLRADLKYRQHHTLQHSHPHIEFNSVKVLEEVDFVKKQLKTVFERLRLE ::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::: CCDS77 TYLKNVINPIQQLRADLKYRQHHTLQHSHPHIEFNSMKVLEEVDFVKKQLKTVFERLRLE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 QQRIENDLSDWSIKILDHSLEEKTNPLSELPIELESLECPYPDLKSSILSEFYKFTQKYQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 QQRIENDLSDWSIKILDHSLEEKTNPLSELPIELESLECPYPDLKSSILSEFYKFTQKYQ 190 200 210 220 230 240 250 pF1KE6 KKLQDFNLQLEDIYR ::::::::::::::: CCDS77 KKLQDFNLQLEDIYR 250 >>CCDS33304.1 CCDC148 gene_id:130940|Hs108|chr2 (591 aa) initn: 1672 init1: 1672 opt: 1672 Z-score: 1524.6 bits: 290.9 E(32554): 1.3e-78 Smith-Waterman score: 1672; 99.6% identity (100.0% similar) in 255 aa overlap (1-255:1-255) 10 20 30 40 50 60 pF1KE6 MCAASASPDNLVFHMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLKIRKAMLTSKLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MCAASASPDNLVFHMKNEMRNIKYKPVDYQQLRALTEAKKLASASAKLKIRKAMLTSKLS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 KEQTLIKQHKQVWWQEYQRLNEVRCKMESEIKSLLNEENIGNECLCDLTNFEQELSEQQC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 KEQTLIKQHKQVWWQEYQRLNEVRCKMESEIKSLLNEENIGNECLCDLTNFEQELSEQQC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 TYLKNVINPIQQLRADLKYRQHHTLQHSHPHIEFNSVKVLEEVDFVKKQLKTVFERLRLE ::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::: CCDS33 TYLKNVINPIQQLRADLKYRQHHTLQHSHPHIEFNSMKVLEEVDFVKKQLKTVFERLRLE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 QQRIENDLSDWSIKILDHSLEEKTNPLSELPIELESLECPYPDLKSSILSEFYKFTQKYQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 QQRIENDLSDWSIKILDHSLEEKTNPLSELPIELESLECPYPDLKSSILSEFYKFTQKYQ 190 200 210 220 230 240 250 pF1KE6 KKLQDFNLQLEDIYR ::::::::::::::: CCDS33 KKLQDFNLQLEDIYRNCQLSEEDHWIYQAILDQYPGDLFGRRTLYLDMLQRYFPHKSRHD 250 260 270 280 290 300 255 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 15:11:13 2016 done: Tue Nov 8 15:11:14 2016 Total Scan time: 1.300 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]