FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5177, 151 aa
  1>>>pF1KE5177 151 - 151 aa - 151 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1277+/-0.000825; mu= 8.8292+/- 0.050
 mean_var=94.2763+/-18.411, 0's: 0 Z-trim(109.9): 10  B-trim: 9 in 1/51
 Lambda= 0.132091
 statistics sampled from 11182 (11184) to 11182 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.344), width:  16
 Scan time:  1.760

The best scores are:                                      opt bits E(32554)
CCDS9378.1 MTRF1 gene_id:9617|Hs108|chr13          ( 445)  968 194.1 8.3e-50


>>CCDS9378.1 MTRF1 gene_id:9617|Hs108|chr13               (445 aa)
 initn: 968 init1: 968 opt: 968  Z-score: 1007.7  bits: 194.1 E(32554): 8.3e-50
Smith-Waterman score: 968; 100.0% identity (100.0% similar) in 138 aa overlap (1-138:1-138)

               10        20        30        40        50        60
pF1KE5 MNRHLCVWLFRHPSLNGYLQCHIQLHSHQFRQIHLDTRLQVFRQNRNCILHLLSKNWSRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MNRHLCVWLFRHPSLNGYLQCHIQLHSHQFRQIHLDTRLQVFRQNRNCILHLLSKNWSRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 YCHQDTKMLWKHKALQKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRRHAELAPLAAIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 YCHQDTKMLWKHKALQKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRRHAELAPLAAIY
               70        80        90       100       110       120

              130       140       150                              
pF1KE5 QEIQETEQAIEELESMCKKTESCSVAQAGMQ                             
       ::::::::::::::::::                                          
CCDS93 QEIQETEQAIEELESMCKSLNKQDEKQLQELALEERQTIDQKINMLYNELFQSLVPKEKY
              130       140       150       160       170       180




151 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:18:55 2016 done: Mon Nov  7 22:18:55 2016
 Total Scan time:  1.760 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]