FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4144, 572 aa 1>>>pF1KE4144 572 - 572 aa - 572 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.7291+/-0.00103; mu= 4.4854+/- 0.062 mean_var=212.7289+/-42.277, 0's: 0 Z-trim(112.0): 37 B-trim: 8 in 1/50 Lambda= 0.087935 statistics sampled from 12833 (12869) to 12833 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.395), width: 16 Scan time: 3.080 The best scores are: opt bits E(32554) CCDS43893.1 FUBP3 gene_id:8939|Hs108|chr9 ( 572) 3891 506.5 3.6e-143 CCDS683.1 FUBP1 gene_id:8880|Hs108|chr1 ( 644) 1926 257.3 4.3e-68 CCDS45936.1 KHSRP gene_id:8570|Hs108|chr19 ( 711) 1591 214.8 2.9e-55 >>CCDS43893.1 FUBP3 gene_id:8939|Hs108|chr9 (572 aa) initn: 3891 init1: 3891 opt: 3891 Z-score: 2683.9 bits: 506.5 E(32554): 3.6e-143 Smith-Waterman score: 3891; 100.0% identity (100.0% similar) in 572 aa overlap (1-572:1-572) 10 20 30 40 50 60 pF1KE4 MAELVQGQSAPVGMKAEGFVDALHRVRQIAAKIDSIPHLNNSTPLVDPSVYGYGVQKRPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 MAELVQGQSAPVGMKAEGFVDALHRVRQIAAKIDSIPHLNNSTPLVDPSVYGYGVQKRPL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 DDGVGNQLGALVHQRTVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 DDGVGNQLGALVHQRTVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 PERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDIDSNSTIQEILIPASKVGLVIGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 PERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDIDSNSTIQEILIPASKVGLVIGR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 GGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDAFKVQQAREMVLEIIREKDQADF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 GGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDAFKVQQAREMVLEIIREKDQADF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 RGVRGDFNSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 RGVRGDFNSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 AQVMGPPDRCQHAAHIISELILTAQERDGFGGLAAARGRGRGRGDWSVGAPGGVQEITYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 AQVMGPPDRCQHAAHIISELILTAQERDGFGGLAAARGRGRGRGDWSVGAPGGVQEITYT 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 VPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRGVPQQIEVARQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 VPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRGVPQQIEVARQL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE4 IDEKVGGTNLGAPGAFGQSPFSQPPAPPHQNTFPPRSSGCFPNMAAKVNGNPHSTPVSGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 IDEKVGGTNLGAPGAFGQSPFSQPPAPPHQNTFPPRSSGCFPNMAAKVNGNPHSTPVSGP 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE4 PAFLTQGWGSTYQAWQQPTQQVPSQQSQPQSSQPNYSKAWEDYYKKQSHAASAAPQASSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 PAFLTQGWGSTYQAWQQPTQQVPSQQSQPQSSQPNYSKAWEDYYKKQSHAASAAPQASSP 490 500 510 520 530 540 550 560 570 pF1KE4 PDYTMAWAEYYRQQVAFYGQTLGQAQAHSQEQ :::::::::::::::::::::::::::::::: CCDS43 PDYTMAWAEYYRQQVAFYGQTLGQAQAHSQEQ 550 560 570 >>CCDS683.1 FUBP1 gene_id:8880|Hs108|chr1 (644 aa) initn: 2013 init1: 948 opt: 1926 Z-score: 1336.0 bits: 257.3 E(32554): 4.3e-68 Smith-Waterman score: 2071; 55.2% identity (71.5% similar) in 618 aa overlap (13-558:25-626) 10 20 30 40 pF1KE4 MAELVQGQSAPVGMKAEGFVDALHRVRQIAAKI--DSIPHLNNSTPLV : ..: :::.:.::::::: :. ::.. CCDS68 MADYSTVPPPSSGSAGGGGGGGGGGGVNDAFKDALQRARQIAAKIGGDAGTSLNSND--- 10 20 30 40 50 50 60 70 80 90 pF1KE4 DPSVYGYGVQKRPLDDG--------------VGNQLGALVHQ--RTVITEEFKVPDKMVG :::: :::::.:: :.:: . .: :.:.:::.:::: ::: CCDS68 ----YGYGGQKRPLEDGDQPDAKKVAPQNDSFGTQLPPMHQQQSRSVMTEEYKVPDGMVG 60 70 80 90 100 110 100 110 120 130 140 150 pF1KE4 FIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVDRCRN :::::::::::::: ::::::::: .:.:.::: :.:::::::...::::: :::.. : CCDS68 FIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRP 120 130 140 150 160 170 160 170 180 190 200 210 pF1KE4 GPGFHNDIDSNSTIQEILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGADK .::::. ....:::.:::::.:::::.:::::::::::.::::::::::: ::::: CCDS68 APGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADK 180 190 200 210 220 230 220 230 240 250 260 pF1KE4 PLRITGDAFKVQQAREMVLEIIREKDQADFRGVRGDFNSRMGGG-SIEVSVPRFAVGIVI ::::::: .:::::.:::::.:: ::. :: ::....::.::. .:.: .::::::::: CCDS68 PLRITGDPYKVQQAKEMVLELIR--DQGGFREVRNEYGSRIGGNEGIDVPIPRFAVGIVI 240 250 260 270 280 290 270 280 290 300 310 320 pF1KE4 GRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHIISELILTAQERDG ::::::::::::::::::::::::: .::: ::. ::::::::::.::..:. ..: . CCDS68 GRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAEIITDLLRSVQAGNP 300 310 320 330 340 350 330 340 350 360 370 380 pF1KE4 FGGLAAARGRGRGRGDWSVGAPGGVQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVE : ..::::::.:.:..: :::.::... ::. : ::.::::::.::::.:::::..: CCDS68 GGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIE 360 370 380 390 400 410 390 400 410 420 430 440 pF1KE4 LQRNPPPNSDPNLRRFTIRGVPQQIEVARQLIDEKVGG--TNLGAP---GAFGQSPFSQP ::::::::.:::.. :::::.::::. :::::.::.:: . :: : : : : CCDS68 LQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGP 420 430 440 450 460 470 450 460 470 480 490 500 pF1KE4 PAPPHQNTFPPRSSGCFPNMAAKVNGNPHSTPVSGPPA-FLTQGWGSTYQAWQQPTQQVP :.:: : : : : : .: . :::: . ::::..: ::: . : CCDS68 PGPPG----PGTPMG--PYNPAPYNPGPPGPAPHGPPAPYAPQGWGNAYPHWQQQAPPDP 480 490 500 510 520 510 pF1KE4 S--------------------QQSQPQSSQP------------------------NYSKA . ::.:: . : .:.:: CCDS68 AKAGTDPNSAAWAAYYAHYYQQQAQPPPAAPAGAPTTTQTNGQGDQQNPAPAGQVDYTKA 530 540 550 560 570 580 520 530 540 550 560 570 pF1KE4 WEDYYKKQSHAASAAPQASSP---PDYTMAWAEYYRQQVAFYGQTLGQAQAHSQEQ ::.::::...:. : : .. : :::. :::::::::.:.: CCDS68 WEEYYKKMGQAVPA-PTGAPPGGQPDYSAAWAEYYRQQAAYYAQTSPQGMPQHPPAPQGQ 590 600 610 620 630 640 >>CCDS45936.1 KHSRP gene_id:8570|Hs108|chr19 (711 aa) initn: 1613 init1: 381 opt: 1591 Z-score: 1105.7 bits: 214.8 E(32554): 2.9e-55 Smith-Waterman score: 1812; 49.8% identity (72.7% similar) in 611 aa overlap (7-554:63-655) 10 20 30 pF1KE4 MAELVQGQSAPVGMKAEGFVDALHRVRQIAAKI--D : ..: :.. ..:.::..:.::::::: : CCDS45 GPPGAGDRGGGGPGGGGPGGGSAGGPSQPPGGGGP-GIRKDAFADAVQRARQIAAKIGGD 40 50 60 70 80 90 40 50 60 70 pF1KE4 SIPHLNNSTPLVDPSVYGYGVQKRPLDDG--------------VGNQLGALVHQ--RTVI . .::::: : .:.: ::: :.:: ...::: .: :: . CCDS45 AATTVNNSTP--D---FGFGGQKRQLEDGDQPESKKLASQGDSISSQLGP-IHPPPRTSM 100 110 120 130 140 80 90 100 110 120 130 pF1KE4 TEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAK :::..::: :::.:::::::::..:: .::::.::. .:.:.::: :::.:::...:: CCDS45 TEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAK 150 160 170 180 190 200 140 150 160 170 180 190 pF1KE4 RLLGQIVDRCRNGPG--FHNDIDS--NSTIQEILIPASKVGLVIGRGGETIKQLQERTGV .: .::.: :.:: ::.. .. :.:.:::.:::.:.:::::.:::::::::::.:: CCDS45 MMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGV 210 220 230 240 250 260 200 210 220 230 240 250 pF1KE4 KMVMIQDGPLPTGADKPLRITGDAFKVQQAREMVLEIIREKDQADFRGVRGDFNSRMGGG ::..:::: :..:::::: :: .::::: :::..:.::.::. : : :....::.::: CCDS45 KMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQGGF-GDRNEYGSRIGGG 270 280 290 300 310 320 260 270 280 290 300 310 pF1KE4 SIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAA :.: ::: .::.::::.:::::::::::::::::: ::: .::. :..:::::::.::: CCDS45 -IDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAA 330 340 350 360 370 380 320 330 340 350 360 pF1KE4 HIISELILTAQERD-----GFGGLAAARGRGRGRGDWSVGAPGGVQEITYTVPADKCGLV .::..:. . . : : ..::::::.:.: : ::: :.:...:. ::::: CCDS45 RIINDLLQSLRSGPPGPPGGPGMPPGGRGRGRGQGNW--GPPGG--EMTFSIPTHKCGLV 390 400 410 420 430 370 380 390 400 410 420 pF1KE4 IGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRGVPQQIEVARQLIDEKV---- ::.::::.:.::::.:: ::..:. :::.:::.. : ::: ::::. :.:::.::. CCDS45 IGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL 440 450 460 470 480 490 430 440 450 460 pF1KE4 -------GGTNLGAP-GAFGQSPFSQ-PP-APPHQ-----NTFPPRSSG-CFPNMAAKVN :: . ..: : :. .::.: :: :::: . .::.. : .:. . CCDS45 CPVGPGPGGPGPAGPMGPFNPGPFNQGPPGAPPHAGGPPPHQYPPQGWGNTYPQWQPPAP 500 510 520 530 540 550 470 480 490 500 510 pF1KE4 GNPHSTPVSGPPAFLTQGWGSTY-QAWQQPTQQVP----------SQQSQPQ---SSQPN .: . ... : . .:.. : . .::: :: .: :: ..: . CCDS45 HDP--SKAAAAAADPNAAWAAYYSHYYQQPPGPVPGPAPAPAAPPAQGEPPQPPPTGQSD 560 570 580 590 600 610 520 530 540 550 560 570 pF1KE4 YSKAWEDYYKKQSHAASAAPQASSPP--DYTMAWAEYYRQQVAFYGQTLGQAQAHSQEQ :.::::.:::: .. . : ..:: ::: :: :::..: CCDS45 YTKAWEEYYKKIGQQPQ---QPGAPPQQDYTKAWEEYYKKQAQVATGGGPGAPPGSQPDY 620 630 640 650 660 670 CCDS45 SAAWAEYYRQQAAYYGQTPGPGGPQPPPTQQGQQQAQ 680 690 700 710 572 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 19:21:16 2016 done: Mon Nov 7 19:21:16 2016 Total Scan time: 3.080 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]