FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3146, 357 aa
  1>>>pF1KE3146 357 - 357 aa - 357 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5560+/-0.000812; mu= 11.6164+/- 0.049
 mean_var=105.9468+/-20.664, 0's: 0 Z-trim(110.4): 11  B-trim: 11 in 1/53
 Lambda= 0.124604
 statistics sampled from 11587 (11596) to 11587 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.356), width:  16
 Scan time:  2.110

The best scores are:                                      opt bits E(32554)
CCDS6148.1 PCMTD1 gene_id:115294|Hs108|chr8        ( 357) 2397 441.2 6.5e-124
CCDS13559.1 PCMTD2 gene_id:55251|Hs108|chr20       ( 361) 1631 303.5 1.9e-82
CCDS69480.1 PCMTD1 gene_id:115294|Hs108|chr8       ( 281) 1493 278.6 4.5e-75
CCDS46631.1 PCMTD2 gene_id:55251|Hs108|chr20       ( 334) 1137 214.6 9.5e-56


>>CCDS6148.1 PCMTD1 gene_id:115294|Hs108|chr8             (357 aa)
 initn: 2397 init1: 2397 opt: 2397  Z-score: 2338.1  bits: 441.2 E(32554): 6.5e-124
Smith-Waterman score: 2397; 100.0% identity (100.0% similar) in 357 aa overlap (1-357:1-357)

               10        20        30        40        50        60
pF1KE3 MGGAVSAGEDNDDLIDNLKEAQYIRTERVEQAFRAIDRGDYYLEGYRDNAYKDLAWKHGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MGGAVSAGEDNDDLIDNLKEAQYIRTERVEQAFRAIDRGDYYLEGYRDNAYKDLAWKHGN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 IHLSAPCIYSEVMEALKLQPGLSFLNLGSGTGYLSTMVGLILGPFGINHGIELHSDVVEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 IHLSAPCIYSEVMEALKLQPGLSFLNLGSGTGYLSTMVGLILGPFGINHGIELHSDVVEY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 AKEKLESFIKNSDSFDKFEFCEPAFVVGNCLQIASDSHQYDRIYCGAGVQKDHENYMKIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 AKEKLESFIKNSDSFDKFEFCEPAFVVGNCLQIASDSHQYDRIYCGAGVQKDHENYMKIL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 LKVGGILVMPIEDQLTQIMRTGQNTWESKNILAVSFAPLVQPSKNDNGKPDSVGLPPCAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 LKVGGILVMPIEDQLTQIMRTGQNTWESKNILAVSFAPLVQPSKNDNGKPDSVGLPPCAV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 RNLQDLARIYIRRTLRNFINDEMQAKGIPQRAPPKRKRKRVKQRINTYVFVGNQLIPQPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 RNLQDLARIYIRRTLRNFINDEMQAKGIPQRAPPKRKRKRVKQRINTYVFVGNQLIPQPL
              250       260       270       280       290       300

              310       320       330       340       350       
pF1KE3 DSEEDEKMEEDNKEEEEKDHNEAMKPEEPPQNLLREKIMKLPLPESLKAYLTYFRDK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 DSEEDEKMEEDNKEEEEKDHNEAMKPEEPPQNLLREKIMKLPLPESLKAYLTYFRDK
              310       320       330       340       350       

>>CCDS13559.1 PCMTD2 gene_id:55251|Hs108|chr20            (361 aa)
 initn: 1656 init1: 1408 opt: 1631  Z-score: 1593.8  bits: 303.5 E(32554): 1.9e-82
Smith-Waterman score: 1631; 67.5% identity (86.5% similar) in 363 aa overlap (1-357:1-361)

               10        20        30        40        50        60
pF1KE3 MGGAVSAGEDNDDLIDNLKEAQYIRTERVEQAFRAIDRGDYYLEGYRDNAYKDLAWKHGN
       ::::::::::::.:::::::::::::: ::::::::::.::::: ...::::::::::::
CCDS13 MGGAVSAGEDNDELIDNLKEAQYIRTELVEQAFRAIDRADYYLEEFKENAYKDLAWKHGN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 IHLSAPCIYSEVMEALKLQPGLSFLNLGSGTGYLSTMVGLILGPFGINHGIELHSDVVEY
       :::::::::::::::: ::::::::::::::::::.::::::::::.:::.::::::.::
CCDS13 IHLSAPCIYSEVMEALDLQPGLSFLNLGSGTGYLSSMVGLILGPFGVNHGVELHSDVIEY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 AKEKLESFIKNSDSFDKFEFCEPAFVVGNCLQIASDSHQYDRIYCGAGVQKDHENYMKIL
       ::.::. ::..:::::::.::::.::.::::.:. :  ::::.::::::::.::.::: :
CCDS13 AKQKLDFFIRTSDSFDKFDFCEPSFVTGNCLEISPDCSQYDRVYCGAGVQKEHEEYMKNL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 LKVGGILVMPIEDQLTQIMRTGQNTWESKNILAVSFAPLVQPSKNDNGKPDSVGLPPCAV
       ::::::::::.:..::.: ::: ..::.:.:::::::::.:: ....::   : ::: ::
CCDS13 LKVGGILVMPLEEKLTKITRTGPSAWETKKILAVSFAPLIQPCHSESGKSRLVQLPPVAV
              190       200       210       220       230       240

              250       260        270       280        290        
pF1KE3 RNLQDLARIYIRRTLRNFINDEMQAK-GIPQRAPPKRKRKRVKQR-INTYVFVGNQL---
       :.::::::: :: :....:..:  .: :   .  :. ::.::..: ..: ::. ...   
CCDS13 RSLQDLARIAIRGTIKKIIHQETVSKNGNGLKNTPRFKRRRVRRRRMETIVFLDKEVFAS
              250       260       270       280       290       300

          300       310       320       330       340       350    
pF1KE3 -IPQPLDSEEDEKMEEDNKEEEEKDHNEAMKPEEPPQNLLREKIMKLPLPESLKAYLTYF
        : .: :..  : .::. .:::::   :. ::. :: :.::.:...::::. :: :: :.
CCDS13 RISNPSDDNSCEDLEEERREEEEKTPPET-KPD-PPVNFLRQKVLSLPLPDPLKYYLLYY
              310       320        330        340       350        

          
pF1KE3 RDK
       :.:
CCDS13 REK
      360 

>>CCDS69480.1 PCMTD1 gene_id:115294|Hs108|chr8            (281 aa)
 initn: 1493 init1: 1493 opt: 1493  Z-score: 1461.3  bits: 278.6 E(32554): 4.5e-75
Smith-Waterman score: 1493; 99.5% identity (100.0% similar) in 221 aa overlap (137-357:61-281)

        110       120       130       140       150       160      
pF1KE3 INHGIELHSDVVEYAKEKLESFIKNSDSFDKFEFCEPAFVVGNCLQIASDSHQYDRIYCG
                                     .:::::::::::::::::::::::::::::
CCDS69 PCCYCGGSGVWLLRTPPSPSAWPARRCPRHRFEFCEPAFVVGNCLQIASDSHQYDRIYCG
               40        50        60        70        80        90

        170       180       190       200       210       220      
pF1KE3 AGVQKDHENYMKILLKVGGILVMPIEDQLTQIMRTGQNTWESKNILAVSFAPLVQPSKND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 AGVQKDHENYMKILLKVGGILVMPIEDQLTQIMRTGQNTWESKNILAVSFAPLVQPSKND
              100       110       120       130       140       150

        230       240       250       260       270       280      
pF1KE3 NGKPDSVGLPPCAVRNLQDLARIYIRRTLRNFINDEMQAKGIPQRAPPKRKRKRVKQRIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 NGKPDSVGLPPCAVRNLQDLARIYIRRTLRNFINDEMQAKGIPQRAPPKRKRKRVKQRIN
              160       170       180       190       200       210

        290       300       310       320       330       340      
pF1KE3 TYVFVGNQLIPQPLDSEEDEKMEEDNKEEEEKDHNEAMKPEEPPQNLLREKIMKLPLPES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 TYVFVGNQLIPQPLDSEEDEKMEEDNKEEEEKDHNEAMKPEEPPQNLLREKIMKLPLPES
              220       230       240       250       260       270

        350       
pF1KE3 LKAYLTYFRDK
       :::::::::::
CCDS69 LKAYLTYFRDK
              280 

>>CCDS46631.1 PCMTD2 gene_id:55251|Hs108|chr20            (334 aa)
 initn: 1385 init1: 1137 opt: 1137  Z-score: 1114.4  bits: 214.6 E(32554): 9.5e-56
Smith-Waterman score: 1438; 62.3% identity (79.6% similar) in 363 aa overlap (1-357:1-334)

               10        20        30        40        50        60
pF1KE3 MGGAVSAGEDNDDLIDNLKEAQYIRTERVEQAFRAIDRGDYYLEGYRDNAYKDLAWKHGN
       ::::::::::::.:::::::::::::: ::::::::::.::::: ...::::::::::::
CCDS46 MGGAVSAGEDNDELIDNLKEAQYIRTELVEQAFRAIDRADYYLEEFKENAYKDLAWKHGN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 IHLSAPCIYSEVMEALKLQPGLSFLNLGSGTGYLSTMVGLILGPFGINHGIELHSDVVEY
       :::::::::::::::: ::::::::::::::::::.::::::::::.:::.::::::.::
CCDS46 IHLSAPCIYSEVMEALDLQPGLSFLNLGSGTGYLSSMVGLILGPFGVNHGVELHSDVIEY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 AKEKLESFIKNSDSFDKFEFCEPAFVVGNCLQIASDSHQYDRIYCGAGVQKDHENYMKIL
       ::.::. ::..:::::::.::::.::.::::.:. :  ::::.::::::::.::.::: :
CCDS46 AKQKLDFFIRTSDSFDKFDFCEPSFVTGNCLEISPDCSQYDRVYCGAGVQKEHEEYMKNL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 LKVGGILVMPIEDQLTQIMRTGQNTWESKNILAVSFAPLVQPSKNDNGKPDSVGLPPCAV
       ::::::::::.:..                           : ....::   : ::: ::
CCDS46 LKVGGILVMPLEEK---------------------------PCHSESGKSRLVQLPPVAV
              190                                  200       210   

              250       260        270       280        290        
pF1KE3 RNLQDLARIYIRRTLRNFINDEMQAK-GIPQRAPPKRKRKRVKQR-INTYVFVGNQL---
       :.::::::: :: :....:..:  .: :   .  :. ::.::..: ..: ::. ...   
CCDS46 RSLQDLARIAIRGTIKKIIHQETVSKNGNGLKNTPRFKRRRVRRRRMETIVFLDKEVFAS
           220       230       240       250       260       270   

          300       310       320       330       340       350    
pF1KE3 -IPQPLDSEEDEKMEEDNKEEEEKDHNEAMKPEEPPQNLLREKIMKLPLPESLKAYLTYF
        : .: :..  : .::. .:::::   :. ::. :: :.::.:...::::. :: :: :.
CCDS46 RISNPSDDNSCEDLEEERREEEEKTPPET-KPD-PPVNFLRQKVLSLPLPDPLKYYLLYY
           280       290       300         310       320       330 

          
pF1KE3 RDK
       :.:
CCDS46 REK
          




357 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 19:14:16 2016 done: Mon Nov  7 19:14:16 2016
 Total Scan time:  2.110 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]