FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3258, 617 aa 1>>>pF1KE3258 617 - 617 aa - 617 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.8674+/-0.000422; mu= 13.0466+/- 0.026 mean_var=145.5172+/-29.408, 0's: 0 Z-trim(116.1): 8 B-trim: 1088 in 2/52 Lambda= 0.106321 statistics sampled from 27077 (27080) to 27077 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.318), width: 16 Scan time: 7.650 The best scores are: opt bits E(85289) NP_003460 (OMIM: 118930) secretogranin-2 precursor ( 617) 4068 636.2 9.6e-182 >>NP_003460 (OMIM: 118930) secretogranin-2 precursor [Ho (617 aa) initn: 4068 init1: 4068 opt: 4068 Z-score: 3383.8 bits: 636.2 E(85289): 9.6e-182 Smith-Waterman score: 4068; 99.5% identity (99.5% similar) in 617 aa overlap (1-617:1-617) 10 20 30 40 50 60 pF1KE3 MAEAKTHWLGAALSLIPLIFLISGAEAASFQRNQLLQKEPDLRLENVQKFPSPEMIRALE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MAEAKTHWLGAALSLIPLIFLISGAEAASFQRNQLLQKEPDLRLENVQKFPSPEMIRALE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 YIENLRQQAHKEESSPDYNPYQGVSVPLQQKENGDESHLPERDSLSEEDWMRIILEALRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 YIENLRQQAHKEESSPDYNPYQGVSVPLQQKENGDESHLPERDSLSEEDWMRIILEALRQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 AENEPQSAPKENKPYALNSEKNFPMDMSDDYETQQWPERKLKHMQFPPMYEENSRDNPFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 AENEPQSAPKENKPYALNSEKNFPMDMSDDYETQQWPERKLKHMQFPPMYEENSRDNPFK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 RTNEIVEEQYTPQSLATLESVFQELGKLTGPNNQKRERMDEEQKLYTDDEDDIYKANNIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 RTNEIVEEQYTPQSLATLESVFQELGKLTGPNNQKRERMDEEQKLYTDDEDDIYKANNIA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 YEDVVGGEDWNPVEEKIESQTQEEVRDSKENIEKNEQINDEMKRSGQLGIQEEGLRKESK ::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::: NP_003 YEDVVGGEDWNPVEEKIESQTQEEVRDSKENIEKNEQINDEMKRSGQLGIQEEDLRKESK 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 DQLSDDVSKVIAYLKRLVNAAGSGRLQNGQNGERATRLFEKPLDSQSIYQLIEISRNLQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 DQLSDDVSKVIAYLKRLVNAAGSGRLQNGQNGERATRLFEKPLDSQSIYQLIEISRNLQI 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 PPEDLIEMLKTGEKPNGSVEPERELDLPVDLDDISEADLDHPDLFQNRMLSKSGYPKTPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 PPEDLIEMLKTGEKPNGSVEPERELDLPVDLDDISEADLDHPDLFQNRMLSKSGYPKTPG 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 GAGTEALPDGLSVEDILNLLGMESAANQKTSYFPNPYNQEKVLPRLPYGAGRSRSNQLPK ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 RAGTEALPDGLSVEDILNLLGMESAANQKTSYFPNPYNQEKVLPRLPYGAGRSRSNQLPK 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 AAWIPHVENRQMAYENLNDKDQELGEYLARMLVKYPEIINSNQVKRVPGQGSSEGDLQEE :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::: NP_003 AAWIPHVENRQMAYENLNDKDQELGEYLARMLVKYPEIINSNQVKRVPGQGSSEDDLQEE 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE3 EQIEQAIKEHLNQGSSQETDKLAPVSKRFPVGPPKNDDTPNRQYWDEDLLMKVLEYLNQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 EQIEQAIKEHLNQGSSQETDKLAPVSKRFPVGPPKNDDTPNRQYWDEDLLMKVLEYLNQE 550 560 570 580 590 600 610 pF1KE3 KAEKGREHIAKRAMENM ::::::::::::::::: NP_003 KAEKGREHIAKRAMENM 610 617 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 18:55:39 2016 done: Mon Nov 7 18:55:40 2016 Total Scan time: 7.650 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]