FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3258, 617 aa 1>>>pF1KE3258 617 - 617 aa - 617 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.7564+/-0.000925; mu= 13.6378+/- 0.056 mean_var=129.6465+/-25.276, 0's: 0 Z-trim(108.9): 20 B-trim: 0 in 0/53 Lambda= 0.112640 statistics sampled from 10545 (10552) to 10545 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.685), E-opt: 0.2 (0.324), width: 16 Scan time: 2.470 The best scores are: opt bits E(32554) CCDS2457.1 SCG2 gene_id:7857|Hs108|chr2 ( 617) 4068 672.8 3.6e-193 >>CCDS2457.1 SCG2 gene_id:7857|Hs108|chr2 (617 aa) initn: 4068 init1: 4068 opt: 4068 Z-score: 3581.4 bits: 672.8 E(32554): 3.6e-193 Smith-Waterman score: 4068; 99.5% identity (99.5% similar) in 617 aa overlap (1-617:1-617) 10 20 30 40 50 60 pF1KE3 MAEAKTHWLGAALSLIPLIFLISGAEAASFQRNQLLQKEPDLRLENVQKFPSPEMIRALE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 MAEAKTHWLGAALSLIPLIFLISGAEAASFQRNQLLQKEPDLRLENVQKFPSPEMIRALE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 YIENLRQQAHKEESSPDYNPYQGVSVPLQQKENGDESHLPERDSLSEEDWMRIILEALRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 YIENLRQQAHKEESSPDYNPYQGVSVPLQQKENGDESHLPERDSLSEEDWMRIILEALRQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 AENEPQSAPKENKPYALNSEKNFPMDMSDDYETQQWPERKLKHMQFPPMYEENSRDNPFK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 AENEPQSAPKENKPYALNSEKNFPMDMSDDYETQQWPERKLKHMQFPPMYEENSRDNPFK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 RTNEIVEEQYTPQSLATLESVFQELGKLTGPNNQKRERMDEEQKLYTDDEDDIYKANNIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 RTNEIVEEQYTPQSLATLESVFQELGKLTGPNNQKRERMDEEQKLYTDDEDDIYKANNIA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 YEDVVGGEDWNPVEEKIESQTQEEVRDSKENIEKNEQINDEMKRSGQLGIQEEGLRKESK ::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::: CCDS24 YEDVVGGEDWNPVEEKIESQTQEEVRDSKENIEKNEQINDEMKRSGQLGIQEEDLRKESK 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 DQLSDDVSKVIAYLKRLVNAAGSGRLQNGQNGERATRLFEKPLDSQSIYQLIEISRNLQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 DQLSDDVSKVIAYLKRLVNAAGSGRLQNGQNGERATRLFEKPLDSQSIYQLIEISRNLQI 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 PPEDLIEMLKTGEKPNGSVEPERELDLPVDLDDISEADLDHPDLFQNRMLSKSGYPKTPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 PPEDLIEMLKTGEKPNGSVEPERELDLPVDLDDISEADLDHPDLFQNRMLSKSGYPKTPG 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 GAGTEALPDGLSVEDILNLLGMESAANQKTSYFPNPYNQEKVLPRLPYGAGRSRSNQLPK ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 RAGTEALPDGLSVEDILNLLGMESAANQKTSYFPNPYNQEKVLPRLPYGAGRSRSNQLPK 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 AAWIPHVENRQMAYENLNDKDQELGEYLARMLVKYPEIINSNQVKRVPGQGSSEGDLQEE :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::: CCDS24 AAWIPHVENRQMAYENLNDKDQELGEYLARMLVKYPEIINSNQVKRVPGQGSSEDDLQEE 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE3 EQIEQAIKEHLNQGSSQETDKLAPVSKRFPVGPPKNDDTPNRQYWDEDLLMKVLEYLNQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 EQIEQAIKEHLNQGSSQETDKLAPVSKRFPVGPPKNDDTPNRQYWDEDLLMKVLEYLNQE 550 560 570 580 590 600 610 pF1KE3 KAEKGREHIAKRAMENM ::::::::::::::::: CCDS24 KAEKGREHIAKRAMENM 610 617 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 18:55:38 2016 done: Mon Nov 7 18:55:39 2016 Total Scan time: 2.470 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]