FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1690, 200 aa 1>>>pF1KE1690 200 - 200 aa - 200 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7276+/-0.000393; mu= 16.1356+/- 0.025 mean_var=58.0443+/-11.711, 0's: 0 Z-trim(112.1): 13 B-trim: 533 in 2/53 Lambda= 0.168343 statistics sampled from 20832 (20842) to 20832 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.244), width: 16 Scan time: 5.680 The best scores are: opt bits E(85289) NP_000605 (OMIM: 118945) ciliary neurotrophic fact ( 200) 1326 330.2 1.4e-90 >>NP_000605 (OMIM: 118945) ciliary neurotrophic factor [ (200 aa) initn: 1326 init1: 1326 opt: 1326 Z-score: 1747.4 bits: 330.2 E(85289): 1.4e-90 Smith-Waterman score: 1326; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200) 10 20 30 40 50 60 pF1KE1 MAFTEHSPLTPHRRDLCSRSIWLARKIRSDLTALTESYVKHQGLNKNINLDSADGMPVAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MAFTEHSPLTPHRRDLCSRSIWLARKIRSDLTALTESYVKHQGLNKNINLDSADGMPVAS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 TDQWSELTEAERLQENLQAYRTFHVLLARLLEDQQVHFTPTEGDFHQAIHTLLLQVAAFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 TDQWSELTEAERLQENLQAYRTFHVLLARLLEDQQVHFTPTEGDFHQAIHTLLLQVAAFA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 YQIEELMILLEYKIPRNEADGMPINVGDGGLFEKKLWGLKVLQELSQWTVRSIHDLRFIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 YQIEELMILLEYKIPRNEADGMPINVGDGGLFEKKLWGLKVLQELSQWTVRSIHDLRFIS 130 140 150 160 170 180 190 200 pF1KE1 SHQTGIPARGSHYIANNKKM :::::::::::::::::::: NP_000 SHQTGIPARGSHYIANNKKM 190 200 200 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 18:49:34 2016 done: Mon Nov 7 18:49:35 2016 Total Scan time: 5.680 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]