FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1690, 200 aa
  1>>>pF1KE1690 200 - 200 aa - 200 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4264+/-0.000911; mu= 12.0569+/- 0.055
 mean_var=58.1693+/-11.733, 0's: 0 Z-trim(105.4): 15  B-trim: 212 in 1/49
 Lambda= 0.168162
 statistics sampled from 8398 (8405) to 8398 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.258), width:  16
 Scan time:  1.850

The best scores are:                                      opt bits E(32554)
CCDS31554.1 CNTF gene_id:1270|Hs108|chr11          ( 200) 1326 329.9 6.5e-91


>>CCDS31554.1 CNTF gene_id:1270|Hs108|chr11               (200 aa)
 initn: 1326 init1: 1326 opt: 1326  Z-score: 1745.6  bits: 329.9 E(32554): 6.5e-91
Smith-Waterman score: 1326; 100.0% identity (100.0% similar) in 200 aa overlap (1-200:1-200)

               10        20        30        40        50        60
pF1KE1 MAFTEHSPLTPHRRDLCSRSIWLARKIRSDLTALTESYVKHQGLNKNINLDSADGMPVAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MAFTEHSPLTPHRRDLCSRSIWLARKIRSDLTALTESYVKHQGLNKNINLDSADGMPVAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 TDQWSELTEAERLQENLQAYRTFHVLLARLLEDQQVHFTPTEGDFHQAIHTLLLQVAAFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TDQWSELTEAERLQENLQAYRTFHVLLARLLEDQQVHFTPTEGDFHQAIHTLLLQVAAFA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 YQIEELMILLEYKIPRNEADGMPINVGDGGLFEKKLWGLKVLQELSQWTVRSIHDLRFIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YQIEELMILLEYKIPRNEADGMPINVGDGGLFEKKLWGLKVLQELSQWTVRSIHDLRFIS
              130       140       150       160       170       180

              190       200
pF1KE1 SHQTGIPARGSHYIANNKKM
       ::::::::::::::::::::
CCDS31 SHQTGIPARGSHYIANNKKM
              190       200




200 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 18:49:33 2016 done: Mon Nov  7 18:49:33 2016
 Total Scan time:  1.850 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]