FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9601, 187 aa 1>>>pF1KE9601 187 - 187 aa - 187 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6778+/-0.000353; mu= 11.1637+/- 0.022 mean_var=73.4352+/-14.515, 0's: 0 Z-trim(114.5): 19 B-trim: 177 in 2/54 Lambda= 0.149666 statistics sampled from 24323 (24337) to 24323 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.285), width: 16 Scan time: 4.360 The best scores are: opt bits E(85289) NP_663748 (OMIM: 612972) tigger transposable eleme ( 591) 345 83.7 6.2e-16 NP_001248762 (OMIM: 603211) jerky protein homolog- ( 524) 211 54.7 2.9e-07 NP_003763 (OMIM: 603211) jerky protein homolog-lik ( 524) 211 54.7 2.9e-07 NP_663761 (OMIM: 612973) tigger transposable eleme ( 525) 209 54.3 3.9e-07 XP_011515657 (OMIM: 603210) PREDICTED: jerky prote ( 535) 163 44.3 0.00038 NP_001266281 (OMIM: 603210) jerky protein homolog ( 556) 163 44.3 0.0004 XP_011515656 (OMIM: 603210) PREDICTED: jerky prote ( 556) 163 44.3 0.0004 NP_001070995 (OMIM: 603210) jerky protein homolog ( 556) 163 44.3 0.0004 XP_006716740 (OMIM: 603210) PREDICTED: jerky prote ( 568) 163 44.3 0.0004 XP_006716741 (OMIM: 603210) PREDICTED: jerky prote ( 568) 163 44.3 0.0004 NP_003715 (OMIM: 603210) jerky protein homolog iso ( 568) 163 44.3 0.0004 NP_149985 (OMIM: 612969) tigger transposable eleme ( 549) 142 39.8 0.0091 >>NP_663748 (OMIM: 612972) tigger transposable element-d (591 aa) initn: 233 init1: 125 opt: 345 Z-score: 407.1 bits: 83.7 E(85289): 6.2e-16 Smith-Waterman score: 345; 35.2% identity (67.6% similar) in 182 aa overlap (9-183:2-181) 10 20 30 40 50 60 pF1KE9 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS :. : .. : ..::. :::... : : . ..:.. : : .::. . .. NP_663 MASKCSSERKSRTSLTLNQKLEMIKLSEEGMSKAEIGRRLGLLRQTVSQVVNA 10 20 30 40 50 70 80 90 100 110 pF1KE9 KEKIKASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAE-- :::. . :::. .:. :.:.... .::..: .:.:::.. : :: ...:.:: NP_663 KEKFLKEVKSATPMN-TRMIRKRNSLIADMEKVLVVWIEDQTSRNIPLSQSLIQNKALTL 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE9 FDDLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDM-----YIEMLKS :.... :.: . :.:.::.::..:::: . ..: .. : : :. : : : . NP_663 FNSMKAERGVEAAEEKFEASRGWFMRFKERSHFHNIKAQGEAASA-DVEAAASYPEALAK 120 130 140 150 160 170 180 pF1KE9 IIEEGEYTPQVSLT ::.:: :: : NP_663 IIDEGGYTKQQIFNVDETAFYWKKMPSRTFIAREEKSVPGFKASKDRLTLLLGANAAGDF 180 190 200 210 220 230 >>NP_001248762 (OMIM: 603211) jerky protein homolog-like (524 aa) initn: 153 init1: 109 opt: 211 Z-score: 251.5 bits: 54.7 E(85289): 2.9e-07 Smith-Waterman score: 211; 27.3% identity (62.5% similar) in 176 aa overlap (14-183:2-171) 10 20 30 40 50 60 pF1KE9 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS :.::.: ..:. ::......: : . .:.: .. .:: :: . NP_001 MSGKRKRVVLTIKDKLDIIKKLEDGGSSKQLAVIYGIGETTVRDIRKN 10 20 30 40 70 80 90 100 110 pF1KE9 KEKI--KASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAE :::: :::. .: : :.: . . ...: ... . :...: . .:. : ..:: NP_001 KEKIITYASSSDSTSLLAKRKS-MKPSMYEELDRAMLEWFNQQRAKGNPISGPICAKRAE 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE9 FDDLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDMYIE----MLKSI : .. : . . :. : :::.:::. : . .... . .. . .: .... NP_001 F----FFYALGMDGD-FNPSAGWLTRFKQRHSIREINIRNERLNGDETAVEDFCNNFRDF 110 120 130 140 150 160 180 pF1KE9 IEEGEYTPQVSLT ::. . :. NP_001 IERENLQPEQIYNADETGLFWKCLPSRISVIKGKCTVPGHKSIEERVTIMCCANATGLHK 170 180 190 200 210 220 >>NP_003763 (OMIM: 603211) jerky protein homolog-like [H (524 aa) initn: 153 init1: 109 opt: 211 Z-score: 251.5 bits: 54.7 E(85289): 2.9e-07 Smith-Waterman score: 211; 27.3% identity (62.5% similar) in 176 aa overlap (14-183:2-171) 10 20 30 40 50 60 pF1KE9 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS :.::.: ..:. ::......: : . .:.: .. .:: :: . NP_003 MSGKRKRVVLTIKDKLDIIKKLEDGGSSKQLAVIYGIGETTVRDIRKN 10 20 30 40 70 80 90 100 110 pF1KE9 KEKI--KASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAE :::: :::. .: : :.: . . ...: ... . :...: . .:. : ..:: NP_003 KEKIITYASSSDSTSLLAKRKS-MKPSMYEELDRAMLEWFNQQRAKGNPISGPICAKRAE 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE9 FDDLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDMYIE----MLKSI : .. : . . :. : :::.:::. : . .... . .. . .: .... NP_003 F----FFYALGMDGD-FNPSAGWLTRFKQRHSIREINIRNERLNGDETAVEDFCNNFRDF 110 120 130 140 150 160 180 pF1KE9 IEEGEYTPQVSLT ::. . :. NP_003 IERENLQPEQIYNADETGLFWKCLPSRISVIKGKCTVPGHKSIEERVTIMCCANATGLHK 170 180 190 200 210 220 >>NP_663761 (OMIM: 612973) tigger transposable element-d (525 aa) initn: 158 init1: 96 opt: 209 Z-score: 249.1 bits: 54.3 E(85289): 3.9e-07 Smith-Waterman score: 209; 28.6% identity (66.4% similar) in 140 aa overlap (16-152:4-136) 10 20 30 40 50 60 pF1KE9 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS ::.: ..:. ::......: : ...... . .. ::: :. . NP_663 MLGKRKRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKN 10 20 30 40 70 80 90 100 110 pF1KE9 KEKIKASSQIATPLRA-SRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAEF ::.: .. . : . :. .:...: ..... :...:. . .:..: ..:.: NP_663 KERIINYANSSDPTSGVSKRKSMKSSTYEELDRVMIEWFNQQKTDGIPVSGTICAKQAKF 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE9 --DDLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDMYIEMLKSIIEE : : : :. :.::.:::.:::. : .: NP_663 FFDALGME-GD------FNASSGWLTRFKQRHGIPKAAGKGTKLKGDETAAREFCGSFQE 110 120 130 140 150 160 180 pF1KE9 GEYTPQVSLT NP_663 FVEKENLQPEQIYGADQTGLFWKCLPSRTLTLETDQSTSGCRSSRERIIIMCCANATGLH 170 180 190 200 210 220 >>XP_011515657 (OMIM: 603210) PREDICTED: jerky protein h (535 aa) initn: 127 init1: 92 opt: 163 Z-score: 195.3 bits: 44.3 E(85289): 0.00038 Smith-Waterman score: 163; 27.0% identity (56.6% similar) in 159 aa overlap (16-171:14-165) 10 20 30 40 50 60 pF1KE9 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS ::.: ..:: :... :.: ::. . . . ....::. :: XP_011 MASKPAAGKSRGEKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAH 10 20 30 40 50 70 80 90 100 110 pF1KE9 KEKIK---ASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKA : .. :::. :. : : : . .: ....: :. . . .. .:. .. ::: XP_011 KAQLLRFFASSDSNKALEQRR-TLH-TPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKA 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE9 EFDDLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDMYIEMLKSIIEE . :. .. . :: : ::: ::: : . .. .: : . :.. XP_011 K--DFYEQM---QLTEPCVFSGGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRS 120 130 140 150 160 170 180 pF1KE9 GEYTPQVSLT XP_011 LAAEHGLSAEQVYNADETGLFWRCLPNPTPEGGAVPGPKQGKDRLTVLMCANATGSHRLK 180 190 200 210 220 230 >>NP_001266281 (OMIM: 603210) jerky protein homolog isof (556 aa) initn: 127 init1: 92 opt: 163 Z-score: 195.1 bits: 44.3 E(85289): 0.0004 Smith-Waterman score: 163; 27.0% identity (56.6% similar) in 159 aa overlap (16-171:14-165) 10 20 30 40 50 60 pF1KE9 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS ::.: ..:: :... :.: ::. . . . ....::. :: NP_001 MASKPAAGKSRGEKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAH 10 20 30 40 50 70 80 90 100 110 pF1KE9 KEKIK---ASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKA : .. :::. :. : : : . .: ....: :. . . .. .:. .. ::: NP_001 KAQLLRFFASSDSNKALEQRR-TLH-TPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKA 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE9 EFDDLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDMYIEMLKSIIEE . :. .. . :: : ::: ::: : . .. .: : . :.. NP_001 K--DFYEQM---QLTEPCVFSGGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRS 120 130 140 150 160 170 180 pF1KE9 GEYTPQVSLT NP_001 LAAEHGLSAEQVYNADETGLFWRCLPNPTPEGGAVPGPKQGKDRLTVLMCANATGSHRLK 180 190 200 210 220 230 >>XP_011515656 (OMIM: 603210) PREDICTED: jerky protein h (556 aa) initn: 127 init1: 92 opt: 163 Z-score: 195.1 bits: 44.3 E(85289): 0.0004 Smith-Waterman score: 163; 27.0% identity (56.6% similar) in 159 aa overlap (16-171:14-165) 10 20 30 40 50 60 pF1KE9 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS ::.: ..:: :... :.: ::. . . . ....::. :: XP_011 MASKPAAGKSRGEKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAH 10 20 30 40 50 70 80 90 100 110 pF1KE9 KEKIK---ASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKA : .. :::. :. : : : . .: ....: :. . . .. .:. .. ::: XP_011 KAQLLRFFASSDSNKALEQRR-TLH-TPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKA 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE9 EFDDLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDMYIEMLKSIIEE . :. .. . :: : ::: ::: : . .. .: : . :.. XP_011 K--DFYEQM---QLTEPCVFSGGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRS 120 130 140 150 160 170 180 pF1KE9 GEYTPQVSLT XP_011 LAAEHGLSAEQVYNADETGLFWRCLPNPTPEGGAVPGPKQGKDRLTVLMCANATGSHRLK 180 190 200 210 220 230 >>NP_001070995 (OMIM: 603210) jerky protein homolog isof (556 aa) initn: 127 init1: 92 opt: 163 Z-score: 195.1 bits: 44.3 E(85289): 0.0004 Smith-Waterman score: 163; 27.0% identity (56.6% similar) in 159 aa overlap (16-171:14-165) 10 20 30 40 50 60 pF1KE9 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS ::.: ..:: :... :.: ::. . . . ....::. :: NP_001 MASKPAAGKSRGEKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAH 10 20 30 40 50 70 80 90 100 110 pF1KE9 KEKIK---ASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKA : .. :::. :. : : : . .: ....: :. . . .. .:. .. ::: NP_001 KAQLLRFFASSDSNKALEQRR-TLH-TPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKA 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE9 EFDDLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDMYIEMLKSIIEE . :. .. . :: : ::: ::: : . .. .: : . :.. NP_001 K--DFYEQM---QLTEPCVFSGGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRS 120 130 140 150 160 170 180 pF1KE9 GEYTPQVSLT NP_001 LAAEHGLSAEQVYNADETGLFWRCLPNPTPEGGAVPGPKQGKDRLTVLMCANATGSHRLK 180 190 200 210 220 230 >>XP_006716740 (OMIM: 603210) PREDICTED: jerky protein h (568 aa) initn: 127 init1: 92 opt: 163 Z-score: 194.9 bits: 44.3 E(85289): 0.0004 Smith-Waterman score: 163; 27.0% identity (56.6% similar) in 159 aa overlap (16-171:14-165) 10 20 30 40 50 60 pF1KE9 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS ::.: ..:: :... :.: ::. . . . ....::. :: XP_006 MASKPAAGKSRGEKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAH 10 20 30 40 50 70 80 90 100 110 pF1KE9 KEKIK---ASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKA : .. :::. :. : : : . .: ....: :. . . .. .:. .. ::: XP_006 KAQLLRFFASSDSNKALEQRR-TLH-TPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKA 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE9 EFDDLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDMYIEMLKSIIEE . :. .. . :: : ::: ::: : . .. .: : . :.. XP_006 K--DFYEQM---QLTEPCVFSGGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRS 120 130 140 150 160 170 180 pF1KE9 GEYTPQVSLT XP_006 LAAEHGLSAEQVYNADETGLFWRCLPNPTPEGGAVPGPKQGKDRLTVLMCANATGSHRLK 180 190 200 210 220 230 >>XP_006716741 (OMIM: 603210) PREDICTED: jerky protein h (568 aa) initn: 127 init1: 92 opt: 163 Z-score: 194.9 bits: 44.3 E(85289): 0.0004 Smith-Waterman score: 163; 27.0% identity (56.6% similar) in 159 aa overlap (16-171:14-165) 10 20 30 40 50 60 pF1KE9 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS ::.: ..:: :... :.: ::. . . . ....::. :: XP_006 MASKPAAGKSRGEKRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAH 10 20 30 40 50 70 80 90 100 110 pF1KE9 KEKIK---ASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKA : .. :::. :. : : : . .: ....: :. . . .. .:. .. ::: XP_006 KAQLLRFFASSDSNKALEQRR-TLH-TPKLEHLDRVLYEWFLGKRSEGVPVSGPMLIEKA 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE9 EFDDLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDMYIEMLKSIIEE . :. .. . :: : ::: ::: : . .. .: : . :.. XP_006 K--DFYEQM---QLTEPCVFSGGWLWRFKARHGIKKLDASSEKQSADHQAAEQFCAFFRS 120 130 140 150 160 170 180 pF1KE9 GEYTPQVSLT XP_006 LAAEHGLSAEQVYNADETGLFWRCLPNPTPEGGAVPGPKQGKDRLTVLMCANATGSHRLK 180 190 200 210 220 230 187 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 18:47:42 2016 done: Mon Nov 7 18:47:43 2016 Total Scan time: 4.360 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]