FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9601, 187 aa 1>>>pF1KE9601 187 - 187 aa - 187 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8558+/-0.000824; mu= 9.9523+/- 0.050 mean_var=71.2822+/-13.979, 0's: 0 Z-trim(107.4): 23 B-trim: 10 in 1/50 Lambda= 0.151909 statistics sampled from 9521 (9533) to 9521 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.293), width: 16 Scan time: 1.350 The best scores are: opt bits E(32554) CCDS45556.1 CENPBD1 gene_id:92806|Hs108|chr16 ( 187) 1189 269.4 9.2e-73 CCDS2495.1 TIGD1 gene_id:200765|Hs108|chr2 ( 591) 345 84.6 1.2e-16 >>CCDS45556.1 CENPBD1 gene_id:92806|Hs108|chr16 (187 aa) initn: 1189 init1: 1189 opt: 1189 Z-score: 1419.8 bits: 269.4 E(32554): 9.2e-73 Smith-Waterman score: 1189; 99.5% identity (99.5% similar) in 187 aa overlap (1-187:1-187) 10 20 30 40 50 60 pF1KE9 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 KEKIKASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAEFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 KEKIKASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAEFD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 DLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDMYIEMLKSIIEEGEY ::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::: CCDS45 DLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDMYTEMLKSIIEEGEY 130 140 150 160 170 180 pF1KE9 TPQVSLT ::::::: CCDS45 TPQVSLT >>CCDS2495.1 TIGD1 gene_id:200765|Hs108|chr2 (591 aa) initn: 233 init1: 125 opt: 345 Z-score: 412.2 bits: 84.6 E(32554): 1.2e-16 Smith-Waterman score: 345; 35.2% identity (67.6% similar) in 182 aa overlap (9-183:2-181) 10 20 30 40 50 60 pF1KE9 MPGERPTDATVIPSAKRERKAITLDLKLEVLRRFEAGEKLSQIAKALDLAISTVATIRDS :. : .. : ..::. :::... : : . ..:.. : : .::. . .. CCDS24 MASKCSSERKSRTSLTLNQKLEMIKLSEEGMSKAEIGRRLGLLRQTVSQVVNA 10 20 30 40 50 70 80 90 100 110 pF1KE9 KEKIKASSQIATPLRASRLTRHRSAVMESMEQLLSLWLEDQSQPNATLSAAIVQEKAE-- :::. . :::. .:. :.:.... .::..: .:.:::.. : :: ...:.:: CCDS24 KEKFLKEVKSATPMN-TRMIRKRNSLIADMEKVLVVWIEDQTSRNIPLSQSLIQNKALTL 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE9 FDDLQREHGEGSQTERFHASQGWLVRFKECHCLPHFKMNSAAPSNKDM-----YIEMLKS :.... :.: . :.:.::.::..:::: . ..: .. : : :. : : : . CCDS24 FNSMKAERGVEAAEEKFEASRGWFMRFKERSHFHNIKAQGEAASA-DVEAAASYPEALAK 120 130 140 150 160 170 180 pF1KE9 IIEEGEYTPQVSLT ::.:: :: : CCDS24 IIDEGGYTKQQIFNVDETAFYWKKMPSRTFIAREEKSVPGFKASKDRLTLLLGANAAGDF 180 190 200 210 220 230 187 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 18:47:41 2016 done: Mon Nov 7 18:47:42 2016 Total Scan time: 1.350 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]