FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9619, 418 aa
  1>>>pF1KE9619 418 - 418 aa - 418 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9515+/-0.000431; mu= 1.0875+/- 0.027
 mean_var=211.7603+/-42.898, 0's: 0 Z-trim(117.5): 31  B-trim: 297 in 2/53
 Lambda= 0.088136
 statistics sampled from 29466 (29495) to 29466 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.346), width:  16
 Scan time:  7.660

The best scores are:                                      opt bits E(85289)
NP_078905 (OMIM: 611511) centromere protein U [Hom ( 418) 2677 353.2 7.3e-97
XP_005263275 (OMIM: 611511) PREDICTED: centromere  ( 448) 2564 338.8 1.6e-92


>>NP_078905 (OMIM: 611511) centromere protein U [Homo sa  (418 aa)
 initn: 2677 init1: 2677 opt: 2677  Z-score: 1860.0  bits: 353.2 E(85289): 7.3e-97
Smith-Waterman score: 2677; 100.0% identity (100.0% similar) in 418 aa overlap (1-418:1-418)

               10        20        30        40        50        60
pF1KE9 MAPRGRRRPRPHRSEGARRSKNTLERTHSMKDKAGQKCKPIDVFDFPDNSDVSSIGRLGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 MAPRGRRRPRPHRSEGARRSKNTLERTHSMKDKAGQKCKPIDVFDFPDNSDVSSIGRLGE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 NEKDEETYETFDPPLHSTAIYADEEEFSKHCGLSLSSTPPGKEAKRSSDTSGNEASEIES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 NEKDEETYETFDPPLHSTAIYADEEEFSKHCGLSLSSTPPGKEAKRSSDTSGNEASEIES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 VKISAKKPGRKLRPISDDSESIEESDTRRKVKSAEKISTQRHEVIRTTASSELSEKPAES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 VKISAKKPGRKLRPISDDSESIEESDTRRKVKSAEKISTQRHEVIRTTASSELSEKPAES
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 VTSKKTGPLSAQPSVEKENLAIESQSKTQKKGKISHDKRKKSRSKAIGSDTSDIVHIWCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 VTSKKTGPLSAQPSVEKENLAIESQSKTQKKGKISHDKRKKSRSKAIGSDTSDIVHIWCP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 EGMKTSDIKELNIVLPEFEKTHLEHQQRIESKVCKAAIATFYVNVKEQFIKMLKESQMLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 EGMKTSDIKELNIVLPEFEKTHLEHQQRIESKVCKAAIATFYVNVKEQFIKMLKESQMLT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE9 NLKRKNAKMISDIEKKRQRMIEVQDELLRLEPQLKQLQTKYDELKERKSSLRNAAYFLSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 NLKRKNAKMISDIEKKRQRMIEVQDELLRLEPQLKQLQTKYDELKERKSSLRNAAYFLSN
              310       320       330       340       350       360

              370       380       390       400       410        
pF1KE9 LKQLYQDYSDVQAQEPNVKETYDSSSLPALLFKARTLLGAESHLRNINHQLEKLLDQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 LKQLYQDYSDVQAQEPNVKETYDSSSLPALLFKARTLLGAESHLRNINHQLEKLLDQG
              370       380       390       400       410        

>>XP_005263275 (OMIM: 611511) PREDICTED: centromere prot  (448 aa)
 initn: 2556 init1: 2556 opt: 2564  Z-score: 1781.9  bits: 338.8 E(85289): 1.6e-92
Smith-Waterman score: 2564; 97.4% identity (98.3% similar) in 416 aa overlap (6-418:33-448)

                                        10           20        30  
pF1KE9                          MAPRGRRRPRPHRS---EGARRSKNTLERTHSMKD
                                     :  : : ..   ..::::::::::::::::
XP_005 IQGPAWIWREGSRLAADGAQSHTPRRSEENRSSPGPGKAAWRRSARRSKNTLERTHSMKD
             10        20        30        40        50        60  

             40        50        60        70        80        90  
pF1KE9 KAGQKCKPIDVFDFPDNSDVSSIGRLGENEKDEETYETFDPPLHSTAIYADEEEFSKHCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KAGQKCKPIDVFDFPDNSDVSSIGRLGENEKDEETYETFDPPLHSTAIYADEEEFSKHCG
             70        80        90       100       110       120  

            100       110       120       130       140       150  
pF1KE9 LSLSSTPPGKEAKRSSDTSGNEASEIESVKISAKKPGRKLRPISDDSESIEESDTRRKVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LSLSSTPPGKEAKRSSDTSGNEASEIESVKISAKKPGRKLRPISDDSESIEESDTRRKVK
            130       140       150       160       170       180  

            160       170       180       190       200       210  
pF1KE9 SAEKISTQRHEVIRTTASSELSEKPAESVTSKKTGPLSAQPSVEKENLAIESQSKTQKKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SAEKISTQRHEVIRTTASSELSEKPAESVTSKKTGPLSAQPSVEKENLAIESQSKTQKKG
            190       200       210       220       230       240  

            220       230       240       250       260       270  
pF1KE9 KISHDKRKKSRSKAIGSDTSDIVHIWCPEGMKTSDIKELNIVLPEFEKTHLEHQQRIESK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KISHDKRKKSRSKAIGSDTSDIVHIWCPEGMKTSDIKELNIVLPEFEKTHLEHQQRIESK
            250       260       270       280       290       300  

            280       290       300       310       320       330  
pF1KE9 VCKAAIATFYVNVKEQFIKMLKESQMLTNLKRKNAKMISDIEKKRQRMIEVQDELLRLEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VCKAAIATFYVNVKEQFIKMLKESQMLTNLKRKNAKMISDIEKKRQRMIEVQDELLRLEP
            310       320       330       340       350       360  

            340       350       360       370       380       390  
pF1KE9 QLKQLQTKYDELKERKSSLRNAAYFLSNLKQLYQDYSDVQAQEPNVKETYDSSSLPALLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QLKQLQTKYDELKERKSSLRNAAYFLSNLKQLYQDYSDVQAQEPNVKETYDSSSLPALLF
            370       380       390       400       410       420  

            400       410        
pF1KE9 KARTLLGAESHLRNINHQLEKLLDQG
       ::::::::::::::::::::::::::
XP_005 KARTLLGAESHLRNINHQLEKLLDQG
            430       440        




418 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 18:43:36 2016 done: Mon Nov  7 18:43:37 2016
 Total Scan time:  7.660 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]