Result of FASTA (ccds) for
pFN21AE4057
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4057, 297 aa
1>>>pF1KE4057 297 - 297 aa - 297 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0032+/-0.000701; mu= 9.5275+/- 0.043
mean_var=132.8293+/-26.301, 0's: 0 Z-trim(114.9): 37 B-trim: 804 in 1/53
Lambda= 0.111283
statistics sampled from 15425 (15462) to 15425 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.797), E-opt: 0.2 (0.475), width: 16
Scan time: 2.830
The best scores are: opt bits E(32554)
CCDS13940.2 KCTD17 gene_id:79734|Hs108|chr22 ( 297) 2022 335.0 4e-92
CCDS74854.1 KCTD17 gene_id:79734|Hs108|chr22 ( 321) 1633 272.6 2.7e-73
CCDS74855.1 KCTD17 gene_id:79734|Hs108|chr22 ( 220) 1420 238.3 4e-63
CCDS10475.1 KCTD5 gene_id:54442|Hs108|chr16 ( 234) 999 170.7 9.2e-43
CCDS32728.1 KCTD2 gene_id:23510|Hs108|chr17 ( 263) 948 162.6 2.9e-40
>>CCDS13940.2 KCTD17 gene_id:79734|Hs108|chr22 (297 aa)
initn: 2022 init1: 2022 opt: 2022 Z-score: 1767.4 bits: 335.0 E(32554): 4e-92
Smith-Waterman score: 2022; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297)
10 20 30 40 50 60
pF1KE4 MQTPRPAMRMEAGEAAPPAGAGGRAAGGWGKWVRLNVGGTVFLTTRQTLCREQKSFLSRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MQTPRPAMRMEAGEAAPPAGAGGRAAGGWGKWVRLNVGGTVFLTTRQTLCREQKSFLSRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 CQGEELQSDRDETGAYLIDRDPTYFGPILNFLRHGKLVLDKDMAEEGVLEEAEFYNIGPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CQGEELQSDRDETGAYLIDRDPTYFGPILNFLRHGKLVLDKDMAEEGVLEEAEFYNIGPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 IRIIKDRMEEKDYTVTQVPPKHVYRVLQCQEEELTQMVSTMSDGWRFEQLVNIGSSYNYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IRIIKDRMEEKDYTVTQVPPKHVYRVLQCQEEELTQMVSTMSDGWRFEQLVNIGSSYNYG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 SEDQAEFLCVVSKELHSTPNGLSSESSRKTKSTEEQLEEQQQQEEEVEEVEVEQVQVEAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SEDQAEFLCVVSKELHSTPNGLSSESSRKTKSTEEQLEEQQQQEEEVEEVEVEQVQVEAD
190 200 210 220 230 240
250 260 270 280 290
pF1KE4 AQEKGSRPHPLRPEAELAVRASPRPLARPQSCHPCCYKPEAPGCEAPDHLQGLGVPI
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AQEKGSRPHPLRPEAELAVRASPRPLARPQSCHPCCYKPEAPGCEAPDHLQGLGVPI
250 260 270 280 290
>>CCDS74854.1 KCTD17 gene_id:79734|Hs108|chr22 (321 aa)
initn: 2055 init1: 1618 opt: 1633 Z-score: 1429.4 bits: 272.6 E(32554): 2.7e-73
Smith-Waterman score: 1964; 92.5% identity (92.5% similar) in 321 aa overlap (1-297:1-321)
10 20 30 40 50 60
pF1KE4 MQTPRPAMRMEAGEAAPPAGAGGRAAGGWGKWVRLNVGGTVFLTTRQTLCREQKSFLSRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MQTPRPAMRMEAGEAAPPAGAGGRAAGGWGKWVRLNVGGTVFLTTRQTLCREQKSFLSRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 CQGEELQSDRDETGAYLIDRDPTYFGPILNFLRHGKLVLDKDMAEEGVLEEAEFYNIGPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 CQGEELQSDRDETGAYLIDRDPTYFGPILNFLRHGKLVLDKDMAEEGVLEEAEFYNIGPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 IRIIKDRMEEKDYTVTQVPPKHVYRVLQCQEEELTQMVSTMSDGWRFEQLVNIGSSYNYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 IRIIKDRMEEKDYTVTQVPPKHVYRVLQCQEEELTQMVSTMSDGWRFEQLVNIGSSYNYG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 SEDQAEFLCVVSKELHSTPNGLSSESSRKTKSTEEQLEEQQQQEEEVEEVEVEQVQVEAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SEDQAEFLCVVSKELHSTPNGLSSESSRKTKSTEEQLEEQQQQEEEVEEVEVEQVQVEAD
190 200 210 220 230 240
250 260 270
pF1KE4 AQEK------------------------GSRPHPLRPEAELAVRASPRPLARPQSCHPCC
:::: ::::::::::::::::::::::::::::::::
CCDS74 AQEKAQSSQDPANLFSLPPLPPPPLPAGGSRPHPLRPEAELAVRASPRPLARPQSCHPCC
250 260 270 280 290 300
280 290
pF1KE4 YKPEAPGCEAPDHLQGLGVPI
:::::::::::::::::::::
CCDS74 YKPEAPGCEAPDHLQGLGVPI
310 320
>>CCDS74855.1 KCTD17 gene_id:79734|Hs108|chr22 (220 aa)
initn: 1420 init1: 1420 opt: 1420 Z-score: 1246.9 bits: 238.3 E(32554): 4e-63
Smith-Waterman score: 1420; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211)
10 20 30 40 50 60
pF1KE4 MQTPRPAMRMEAGEAAPPAGAGGRAAGGWGKWVRLNVGGTVFLTTRQTLCREQKSFLSRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MQTPRPAMRMEAGEAAPPAGAGGRAAGGWGKWVRLNVGGTVFLTTRQTLCREQKSFLSRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 CQGEELQSDRDETGAYLIDRDPTYFGPILNFLRHGKLVLDKDMAEEGVLEEAEFYNIGPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 CQGEELQSDRDETGAYLIDRDPTYFGPILNFLRHGKLVLDKDMAEEGVLEEAEFYNIGPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 IRIIKDRMEEKDYTVTQVPPKHVYRVLQCQEEELTQMVSTMSDGWRFEQLVNIGSSYNYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 IRIIKDRMEEKDYTVTQVPPKHVYRVLQCQEEELTQMVSTMSDGWRFEQLVNIGSSYNYG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 SEDQAEFLCVVSKELHSTPNGLSSESSRKTKSTEEQLEEQQQQEEEVEEVEVEQVQVEAD
:::::::::::::::::::::::::::::::
CCDS74 SEDQAEFLCVVSKELHSTPNGLSSESSRKTKLLQARGTRM
190 200 210 220
250 260 270 280 290
pF1KE4 AQEKGSRPHPLRPEAELAVRASPRPLARPQSCHPCCYKPEAPGCEAPDHLQGLGVPI
>>CCDS10475.1 KCTD5 gene_id:54442|Hs108|chr16 (234 aa)
initn: 1008 init1: 798 opt: 999 Z-score: 881.2 bits: 170.7 E(32554): 9.2e-43
Smith-Waterman score: 999; 74.2% identity (90.9% similar) in 198 aa overlap (20-216:33-230)
10 20 30 40
pF1KE4 MQTPRPAMRMEAGEAAPPAGAGGRAAGGWGKWVRLNVGGTVFLTTRQTL
:: .. :. .:::::::::: ::::::::
CCDS10 ENHCELLSPARGGIGAGLGGGLCRRCSAGLGALAQRPGSVSKWVRLNVGGTYFLTTRQTL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE4 CREQKSFLSRLCQGE-ELQSDRDETGAYLIDRDPTYFGPILNFLRHGKLVLDKDMAEEGV
::. :::: ::::.. .:.::.:::::::::::::::::.::.:::::::..::.:::::
CCDS10 CRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGV
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE4 LEEAEFYNIGPLIRIIKDRMEEKDYTVTQVPPKHVYRVLQCQEEELTQMVSTMSDGWRFE
::::::::: ::...::...:.: ..::: :::::::::::::::::::::::::.::
CCDS10 LEEAEFYNITSLIKLVKDKIRERDSKTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWKFE
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE4 QLVNIGSSYNYGSEDQAEFLCVVSKELHSTPNGLSSESSRKTKSTEEQLEEQQQQEEEVE
:::.::::::::.:::::::::::::::.:: : .:: :.:.: .:.
CCDS10 QLVSIGSSYNYGNEDQAEFLCVVSKELHNTPYGTASEPSEKAKILQERGSRM
190 200 210 220 230
230 240 250 260 270 280
pF1KE4 EVEVEQVQVEADAQEKGSRPHPLRPEAELAVRASPRPLARPQSCHPCCYKPEAPGCEAPD
>>CCDS32728.1 KCTD2 gene_id:23510|Hs108|chr17 (263 aa)
initn: 951 init1: 733 opt: 948 Z-score: 836.2 bits: 162.6 E(32554): 2.9e-40
Smith-Waterman score: 948; 67.9% identity (85.8% similar) in 212 aa overlap (7-216:52-259)
10 20 30
pF1KE4 MQTPRPAMRMEAGEAAPPAGAGGRAAGGWGKWVRLN
:. .: : . :: ::: :: ..:::::
CCDS32 GDGGGPVRGPPSPRPAGPTPRGHGRPAAAVAQPLEPGPG-PPERAGG---GGAARWVRLN
30 40 50 60 70
40 50 60 70 80 90
pF1KE4 VGGTVFLTTRQTLCREQKSFLSRLCQGE--ELQSDRDETGAYLIDRDPTYFGPILNFLRH
:::: :.:::::: :: :::: ::: : ::.::.::::::::::::::::::::.:::
CCDS32 VGGTYFVTTRQTLGREPKSFLCRLCCQEDPELDSDKDETGAYLIDRDPTYFGPILNYLRH
80 90 100 110 120 130
100 110 120 130 140 150
pF1KE4 GKLVLDKDMAEEGVLEEAEFYNIGPLIRIIKDRMEEKDYTVTQVPPKHVYRVLQCQEEEL
:::.. :..::::::::::::::. :.:..:.:..... ..: : ::::::::::::::
CCDS32 GKLIITKELAEEGVLEEAEFYNIASLVRLVKERIRDNENRTSQGPVKHVYRVLQCQEEEL
140 150 160 170 180 190
160 170 180 190 200 210
pF1KE4 TQMVSTMSDGWRFEQLVNIGSSYNYGSEDQAEFLCVVSKELHSTPNGLSSESSRKTKSTE
:::::::::::.::::..::::::::.:::::::::::.::... ::. : :.:.: .
CCDS32 TQMVSTMSDGWKFEQLISIGSSYNYGNEDQAEFLCVVSRELNNSTNGIVIEPSEKAKILQ
200 210 220 230 240 250
220 230 240 250 260 270
pF1KE4 EQLEEQQQQEEEVEEVEVEQVQVEADAQEKGSRPHPLRPEAELAVRASPRPLARPQSCHP
:.
CCDS32 ERGSRM
260
297 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 18:15:22 2016 done: Mon Nov 7 18:15:22 2016
Total Scan time: 2.830 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]