FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2090, 769 aa 1>>>pF1KE2090 769 - 769 aa - 769 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.5885+/-0.000492; mu= 4.3112+/- 0.031 mean_var=157.3275+/-31.700, 0's: 0 Z-trim(113.0): 56 B-trim: 0 in 0/56 Lambda= 0.102252 statistics sampled from 22103 (22128) to 22103 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.596), E-opt: 0.2 (0.259), width: 16 Scan time: 11.220 The best scores are: opt bits E(85289) NP_060842 (OMIM: 615354) ligand-dependent nuclear ( 769) 4890 734.3 4.7e-211 XP_005271086 (OMIM: 615354) PREDICTED: ligand-depe ( 768) 4871 731.5 3.2e-210 XP_011540070 (OMIM: 615354) PREDICTED: ligand-depe ( 742) 4706 707.1 6.7e-203 XP_016857257 (OMIM: 615354) PREDICTED: ligand-depe ( 741) 4687 704.3 4.7e-202 XP_016857258 (OMIM: 615354) PREDICTED: ligand-depe ( 639) 3958 596.7 9.7e-170 NP_001006946 (OMIM: 615354) ligand-dependent nucle ( 233) 1495 233.2 9.5e-61 >>NP_060842 (OMIM: 615354) ligand-dependent nuclear rece (769 aa) initn: 4890 init1: 4890 opt: 4890 Z-score: 3910.2 bits: 734.3 E(85289): 4.7e-211 Smith-Waterman score: 4890; 100.0% identity (100.0% similar) in 769 aa overlap (1-769:1-769) 10 20 30 40 50 60 pF1KE2 MSNNLRRVFLKPAEENSGNASRCVSGCMYQVVQTIGSDGKNLLQLLPIPKSSGNLIPLVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 MSNNLRRVFLKPAEENSGNASRCVSGCMYQVVQTIGSDGKNLLQLLPIPKSSGNLIPLVQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 SSVMSDALKGNTGKPVQVTFQTQISSSSTSASVQLPIFQPASSSNYFLTRTVDTSEKGRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 SSVMSDALKGNTGKPVQVTFQTQISSSSTSASVQLPIFQPASSSNYFLTRTVDTSEKGRV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 TSVGTGNFSSSVSKVQSHGVKIDGLTMQTFAVPPSTQKDSSFIVVNTQSLPVTVKSPVLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 TSVGTGNFSSSVSKVQSHGVKIDGLTMQTFAVPPSTQKDSSFIVVNTQSLPVTVKSPVLP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 SGHHLQIPAHAEVKSVPASSLPPSVQQKILATATTSTSGMVEASQMPTVIYVSPVNTVKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 SGHHLQIPAHAEVKSVPASSLPPSVQQKILATATTSTSGMVEASQMPTVIYVSPVNTVKN 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 VVTKNFQNIYPKPVTEIAKPVILNTTQIPKNVATETQLKGGQHSQAAPVKWIFQDNLQPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 VVTKNFQNIYPKPVTEIAKPVILNTTQIPKNVATETQLKGGQHSQAAPVKWIFQDNLQPF 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 TPSLVPVKSSNNVASKILKTFVDRKNLGDNTINMPPLSTIDPSGTRSKNMPIKDNALVMF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 TPSLVPVKSSNNVASKILKTFVDRKNLGDNTINMPPLSTIDPSGTRSKNMPIKDNALVMF 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 NGKVYLLAKKGTDVLPSQIDQQNSVSPDTPVRKDTLQTVSSSPVTEISREVVNIVLAKSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 NGKVYLLAKKGTDVLPSQIDQQNSVSPDTPVRKDTLQTVSSSPVTEISREVVNIVLAKSK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 SSQMETKSLSNTQLASMANLRAEKNKVEKPSPSTTNPHMNQSSNYLKQSKTLFTNPIFPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 SSQMETKSLSNTQLASMANLRAEKNKVEKPSPSTTNPHMNQSSNYLKQSKTLFTNPIFPV 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE2 GFSTGHNAPRKVTAVIYARKGSVLQSIEKISSSVDATTVTSQQCVFRDQEPKIHNEMAST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 GFSTGHNAPRKVTAVIYARKGSVLQSIEKISSSVDATTVTSQQCVFRDQEPKIHNEMAST 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE2 SDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 SDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSF 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE2 SSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIINGEANV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 SSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIINGEANV 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE2 TGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 TGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFF 670 680 690 700 710 720 730 740 750 760 pF1KE2 NKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK ::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 NKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK 730 740 750 760 >>XP_005271086 (OMIM: 615354) PREDICTED: ligand-dependen (768 aa) initn: 3958 init1: 3958 opt: 4871 Z-score: 3895.0 bits: 731.5 E(85289): 3.2e-210 Smith-Waterman score: 4871; 99.9% identity (99.9% similar) in 769 aa overlap (1-769:1-768) 10 20 30 40 50 60 pF1KE2 MSNNLRRVFLKPAEENSGNASRCVSGCMYQVVQTIGSDGKNLLQLLPIPKSSGNLIPLVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MSNNLRRVFLKPAEENSGNASRCVSGCMYQVVQTIGSDGKNLLQLLPIPKSSGNLIPLVQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 SSVMSDALKGNTGKPVQVTFQTQISSSSTSASVQLPIFQPASSSNYFLTRTVDTSEKGRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SSVMSDALKGNTGKPVQVTFQTQISSSSTSASVQLPIFQPASSSNYFLTRTVDTSEKGRV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 TSVGTGNFSSSVSKVQSHGVKIDGLTMQTFAVPPSTQKDSSFIVVNTQSLPVTVKSPVLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 TSVGTGNFSSSVSKVQSHGVKIDGLTMQTFAVPPSTQKDSSFIVVNTQSLPVTVKSPVLP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 SGHHLQIPAHAEVKSVPASSLPPSVQQKILATATTSTSGMVEASQMPTVIYVSPVNTVKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SGHHLQIPAHAEVKSVPASSLPPSVQQKILATATTSTSGMVEASQMPTVIYVSPVNTVKN 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 VVTKNFQNIYPKPVTEIAKPVILNTTQIPKNVATETQLKGGQHSQAAPVKWIFQDNLQPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 VVTKNFQNIYPKPVTEIAKPVILNTTQIPKNVATETQLKGGQHSQAAPVKWIFQDNLQPF 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 TPSLVPVKSSNNVASKILKTFVDRKNLGDNTINMPPLSTIDPSGTRSKNMPIKDNALVMF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 TPSLVPVKSSNNVASKILKTFVDRKNLGDNTINMPPLSTIDPSGTRSKNMPIKDNALVMF 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 NGKVYLLAKKGTDVLPSQIDQQNSVSPDTPVRKDTLQTVSSSPVTEISREVVNIVLAKSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 NGKVYLLAKKGTDVLPSQIDQQNSVSPDTPVRKDTLQTVSSSPVTEISREVVNIVLAKSK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 SSQMETKSLSNTQLASMANLRAEKNKVEKPSPSTTNPHMNQSSNYLKQSKTLFTNPIFPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SSQMETKSLSNTQLASMANLRAEKNKVEKPSPSTTNPHMNQSSNYLKQSKTLFTNPIFPV 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE2 GFSTGHNAPRKVTAVIYARKGSVLQSIEKISSSVDATTVTSQQCVFRDQEPKIHNEMAST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GFSTGHNAPRKVTAVIYARKGSVLQSIEKISSSVDATTVTSQQCVFRDQEPKIHNEMAST 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE2 SDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSF 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE2 SSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIINGEANV ::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::: XP_005 SSLVKSGTYKETEFMVKEGERKQ-NFDKKRKAKTNKKMDHIKKRKTENAYNAIINGEANV 610 620 630 640 650 670 680 690 700 710 720 pF1KE2 TGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 TGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFF 660 670 680 690 700 710 730 740 750 760 pF1KE2 NKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK ::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 NKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK 720 730 740 750 760 >>XP_011540070 (OMIM: 615354) PREDICTED: ligand-dependen (742 aa) initn: 4706 init1: 4706 opt: 4706 Z-score: 3763.7 bits: 707.1 E(85289): 6.7e-203 Smith-Waterman score: 4706; 100.0% identity (100.0% similar) in 742 aa overlap (28-769:1-742) 10 20 30 40 50 60 pF1KE2 MSNNLRRVFLKPAEENSGNASRCVSGCMYQVVQTIGSDGKNLLQLLPIPKSSGNLIPLVQ ::::::::::::::::::::::::::::::::: XP_011 MYQVVQTIGSDGKNLLQLLPIPKSSGNLIPLVQ 10 20 30 70 80 90 100 110 120 pF1KE2 SSVMSDALKGNTGKPVQVTFQTQISSSSTSASVQLPIFQPASSSNYFLTRTVDTSEKGRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SSVMSDALKGNTGKPVQVTFQTQISSSSTSASVQLPIFQPASSSNYFLTRTVDTSEKGRV 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE2 TSVGTGNFSSSVSKVQSHGVKIDGLTMQTFAVPPSTQKDSSFIVVNTQSLPVTVKSPVLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TSVGTGNFSSSVSKVQSHGVKIDGLTMQTFAVPPSTQKDSSFIVVNTQSLPVTVKSPVLP 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE2 SGHHLQIPAHAEVKSVPASSLPPSVQQKILATATTSTSGMVEASQMPTVIYVSPVNTVKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SGHHLQIPAHAEVKSVPASSLPPSVQQKILATATTSTSGMVEASQMPTVIYVSPVNTVKN 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE2 VVTKNFQNIYPKPVTEIAKPVILNTTQIPKNVATETQLKGGQHSQAAPVKWIFQDNLQPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VVTKNFQNIYPKPVTEIAKPVILNTTQIPKNVATETQLKGGQHSQAAPVKWIFQDNLQPF 220 230 240 250 260 270 310 320 330 340 350 360 pF1KE2 TPSLVPVKSSNNVASKILKTFVDRKNLGDNTINMPPLSTIDPSGTRSKNMPIKDNALVMF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TPSLVPVKSSNNVASKILKTFVDRKNLGDNTINMPPLSTIDPSGTRSKNMPIKDNALVMF 280 290 300 310 320 330 370 380 390 400 410 420 pF1KE2 NGKVYLLAKKGTDVLPSQIDQQNSVSPDTPVRKDTLQTVSSSPVTEISREVVNIVLAKSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NGKVYLLAKKGTDVLPSQIDQQNSVSPDTPVRKDTLQTVSSSPVTEISREVVNIVLAKSK 340 350 360 370 380 390 430 440 450 460 470 480 pF1KE2 SSQMETKSLSNTQLASMANLRAEKNKVEKPSPSTTNPHMNQSSNYLKQSKTLFTNPIFPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SSQMETKSLSNTQLASMANLRAEKNKVEKPSPSTTNPHMNQSSNYLKQSKTLFTNPIFPV 400 410 420 430 440 450 490 500 510 520 530 540 pF1KE2 GFSTGHNAPRKVTAVIYARKGSVLQSIEKISSSVDATTVTSQQCVFRDQEPKIHNEMAST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GFSTGHNAPRKVTAVIYARKGSVLQSIEKISSSVDATTVTSQQCVFRDQEPKIHNEMAST 460 470 480 490 500 510 550 560 570 580 590 600 pF1KE2 SDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSF 520 530 540 550 560 570 610 620 630 640 650 660 pF1KE2 SSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIINGEANV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIINGEANV 580 590 600 610 620 630 670 680 690 700 710 720 pF1KE2 TGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFF 640 650 660 670 680 690 730 740 750 760 pF1KE2 NKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK ::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK 700 710 720 730 740 >>XP_016857257 (OMIM: 615354) PREDICTED: ligand-dependen (741 aa) initn: 3774 init1: 3774 opt: 4687 Z-score: 3748.6 bits: 704.3 E(85289): 4.7e-202 Smith-Waterman score: 4687; 99.9% identity (99.9% similar) in 742 aa overlap (28-769:1-741) 10 20 30 40 50 60 pF1KE2 MSNNLRRVFLKPAEENSGNASRCVSGCMYQVVQTIGSDGKNLLQLLPIPKSSGNLIPLVQ ::::::::::::::::::::::::::::::::: XP_016 MYQVVQTIGSDGKNLLQLLPIPKSSGNLIPLVQ 10 20 30 70 80 90 100 110 120 pF1KE2 SSVMSDALKGNTGKPVQVTFQTQISSSSTSASVQLPIFQPASSSNYFLTRTVDTSEKGRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SSVMSDALKGNTGKPVQVTFQTQISSSSTSASVQLPIFQPASSSNYFLTRTVDTSEKGRV 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE2 TSVGTGNFSSSVSKVQSHGVKIDGLTMQTFAVPPSTQKDSSFIVVNTQSLPVTVKSPVLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TSVGTGNFSSSVSKVQSHGVKIDGLTMQTFAVPPSTQKDSSFIVVNTQSLPVTVKSPVLP 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE2 SGHHLQIPAHAEVKSVPASSLPPSVQQKILATATTSTSGMVEASQMPTVIYVSPVNTVKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SGHHLQIPAHAEVKSVPASSLPPSVQQKILATATTSTSGMVEASQMPTVIYVSPVNTVKN 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE2 VVTKNFQNIYPKPVTEIAKPVILNTTQIPKNVATETQLKGGQHSQAAPVKWIFQDNLQPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VVTKNFQNIYPKPVTEIAKPVILNTTQIPKNVATETQLKGGQHSQAAPVKWIFQDNLQPF 220 230 240 250 260 270 310 320 330 340 350 360 pF1KE2 TPSLVPVKSSNNVASKILKTFVDRKNLGDNTINMPPLSTIDPSGTRSKNMPIKDNALVMF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TPSLVPVKSSNNVASKILKTFVDRKNLGDNTINMPPLSTIDPSGTRSKNMPIKDNALVMF 280 290 300 310 320 330 370 380 390 400 410 420 pF1KE2 NGKVYLLAKKGTDVLPSQIDQQNSVSPDTPVRKDTLQTVSSSPVTEISREVVNIVLAKSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 NGKVYLLAKKGTDVLPSQIDQQNSVSPDTPVRKDTLQTVSSSPVTEISREVVNIVLAKSK 340 350 360 370 380 390 430 440 450 460 470 480 pF1KE2 SSQMETKSLSNTQLASMANLRAEKNKVEKPSPSTTNPHMNQSSNYLKQSKTLFTNPIFPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SSQMETKSLSNTQLASMANLRAEKNKVEKPSPSTTNPHMNQSSNYLKQSKTLFTNPIFPV 400 410 420 430 440 450 490 500 510 520 530 540 pF1KE2 GFSTGHNAPRKVTAVIYARKGSVLQSIEKISSSVDATTVTSQQCVFRDQEPKIHNEMAST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GFSTGHNAPRKVTAVIYARKGSVLQSIEKISSSVDATTVTSQQCVFRDQEPKIHNEMAST 460 470 480 490 500 510 550 560 570 580 590 600 pF1KE2 SDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSF 520 530 540 550 560 570 610 620 630 640 650 660 pF1KE2 SSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIINGEANV ::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::: XP_016 SSLVKSGTYKETEFMVKEGERKQ-NFDKKRKAKTNKKMDHIKKRKTENAYNAIINGEANV 580 590 600 610 620 630 670 680 690 700 710 720 pF1KE2 TGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFF 640 650 660 670 680 690 730 740 750 760 pF1KE2 NKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK ::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 NKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK 700 710 720 730 740 >>XP_016857258 (OMIM: 615354) PREDICTED: ligand-dependen (639 aa) initn: 3958 init1: 3958 opt: 3958 Z-score: 3168.4 bits: 596.7 E(85289): 9.7e-170 Smith-Waterman score: 3958; 100.0% identity (100.0% similar) in 623 aa overlap (1-623:1-623) 10 20 30 40 50 60 pF1KE2 MSNNLRRVFLKPAEENSGNASRCVSGCMYQVVQTIGSDGKNLLQLLPIPKSSGNLIPLVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MSNNLRRVFLKPAEENSGNASRCVSGCMYQVVQTIGSDGKNLLQLLPIPKSSGNLIPLVQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 SSVMSDALKGNTGKPVQVTFQTQISSSSTSASVQLPIFQPASSSNYFLTRTVDTSEKGRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SSVMSDALKGNTGKPVQVTFQTQISSSSTSASVQLPIFQPASSSNYFLTRTVDTSEKGRV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 TSVGTGNFSSSVSKVQSHGVKIDGLTMQTFAVPPSTQKDSSFIVVNTQSLPVTVKSPVLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TSVGTGNFSSSVSKVQSHGVKIDGLTMQTFAVPPSTQKDSSFIVVNTQSLPVTVKSPVLP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 SGHHLQIPAHAEVKSVPASSLPPSVQQKILATATTSTSGMVEASQMPTVIYVSPVNTVKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SGHHLQIPAHAEVKSVPASSLPPSVQQKILATATTSTSGMVEASQMPTVIYVSPVNTVKN 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 VVTKNFQNIYPKPVTEIAKPVILNTTQIPKNVATETQLKGGQHSQAAPVKWIFQDNLQPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VVTKNFQNIYPKPVTEIAKPVILNTTQIPKNVATETQLKGGQHSQAAPVKWIFQDNLQPF 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 TPSLVPVKSSNNVASKILKTFVDRKNLGDNTINMPPLSTIDPSGTRSKNMPIKDNALVMF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TPSLVPVKSSNNVASKILKTFVDRKNLGDNTINMPPLSTIDPSGTRSKNMPIKDNALVMF 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 NGKVYLLAKKGTDVLPSQIDQQNSVSPDTPVRKDTLQTVSSSPVTEISREVVNIVLAKSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 NGKVYLLAKKGTDVLPSQIDQQNSVSPDTPVRKDTLQTVSSSPVTEISREVVNIVLAKSK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 SSQMETKSLSNTQLASMANLRAEKNKVEKPSPSTTNPHMNQSSNYLKQSKTLFTNPIFPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SSQMETKSLSNTQLASMANLRAEKNKVEKPSPSTTNPHMNQSSNYLKQSKTLFTNPIFPV 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE2 GFSTGHNAPRKVTAVIYARKGSVLQSIEKISSSVDATTVTSQQCVFRDQEPKIHNEMAST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GFSTGHNAPRKVTAVIYARKGSVLQSIEKISSSVDATTVTSQQCVFRDQEPKIHNEMAST 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE2 SDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSF 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE2 SSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIINGEANV ::::::::::::::::::::::: XP_016 SSLVKSGTYKETEFMVKEGERKQVAVRGEDLAIYRRREK 610 620 630 >>NP_001006946 (OMIM: 615354) ligand-dependent nuclear r (233 aa) initn: 1495 init1: 1495 opt: 1495 Z-score: 1211.7 bits: 233.2 E(85289): 9.5e-61 Smith-Waterman score: 1495; 100.0% identity (100.0% similar) in 233 aa overlap (537-769:1-233) 510 520 530 540 550 560 pF1KE2 IEKISSSVDATTVTSQQCVFRDQEPKIHNEMASTSDKGAQGRNDKKDSQGRSNKALHLKS :::::::::::::::::::::::::::::: NP_001 MASTSDKGAQGRNDKKDSQGRSNKALHLKS 10 20 30 570 580 590 600 610 620 pF1KE2 DAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSFSSLVKSGTYKETEFMVKEGERKQQNF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSFSSLVKSGTYKETEFMVKEGERKQQNF 40 50 60 70 80 90 630 640 650 660 670 680 pF1KE2 DKKRKAKTNKKMDHIKKRKTENAYNAIINGEANVTGSQLLSSILPTSDVSQHNILTSHSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DKKRKAKTNKKMDHIKKRKTENAYNAIINGEANVTGSQLLSSILPTSDVSQHNILTSHSK 100 110 120 130 140 150 690 700 710 720 730 740 pF1KE2 TRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDEKIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDEKIR 160 170 180 190 200 210 750 760 pF1KE2 RLKQVLREKEAALEEMRKKMHQK ::::::::::::::::::::::: NP_001 RLKQVLREKEAALEEMRKKMHQK 220 230 769 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 18:09:39 2016 done: Mon Nov 7 18:09:41 2016 Total Scan time: 11.220 Total Display time: 0.090 Function used was FASTA [36.3.4 Apr, 2011]