FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2090, 769 aa 1>>>pF1KE2090 769 - 769 aa - 769 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.5529+/-0.00116; mu= 9.9514+/- 0.069 mean_var=121.1814+/-23.907, 0's: 0 Z-trim(105.4): 37 B-trim: 5 in 1/49 Lambda= 0.116508 statistics sampled from 8385 (8400) to 8385 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.598), E-opt: 0.2 (0.258), width: 16 Scan time: 3.950 The best scores are: opt bits E(32554) CCDS30800.1 LRIF1 gene_id:55791|Hs108|chr1 ( 769) 4890 833.8 0 CCDS41366.1 LRIF1 gene_id:55791|Hs108|chr1 ( 233) 1495 262.9 4.1e-70 >>CCDS30800.1 LRIF1 gene_id:55791|Hs108|chr1 (769 aa) initn: 4890 init1: 4890 opt: 4890 Z-score: 4448.1 bits: 833.8 E(32554): 0 Smith-Waterman score: 4890; 100.0% identity (100.0% similar) in 769 aa overlap (1-769:1-769) 10 20 30 40 50 60 pF1KE2 MSNNLRRVFLKPAEENSGNASRCVSGCMYQVVQTIGSDGKNLLQLLPIPKSSGNLIPLVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 MSNNLRRVFLKPAEENSGNASRCVSGCMYQVVQTIGSDGKNLLQLLPIPKSSGNLIPLVQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 SSVMSDALKGNTGKPVQVTFQTQISSSSTSASVQLPIFQPASSSNYFLTRTVDTSEKGRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 SSVMSDALKGNTGKPVQVTFQTQISSSSTSASVQLPIFQPASSSNYFLTRTVDTSEKGRV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 TSVGTGNFSSSVSKVQSHGVKIDGLTMQTFAVPPSTQKDSSFIVVNTQSLPVTVKSPVLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 TSVGTGNFSSSVSKVQSHGVKIDGLTMQTFAVPPSTQKDSSFIVVNTQSLPVTVKSPVLP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 SGHHLQIPAHAEVKSVPASSLPPSVQQKILATATTSTSGMVEASQMPTVIYVSPVNTVKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 SGHHLQIPAHAEVKSVPASSLPPSVQQKILATATTSTSGMVEASQMPTVIYVSPVNTVKN 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 VVTKNFQNIYPKPVTEIAKPVILNTTQIPKNVATETQLKGGQHSQAAPVKWIFQDNLQPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 VVTKNFQNIYPKPVTEIAKPVILNTTQIPKNVATETQLKGGQHSQAAPVKWIFQDNLQPF 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 TPSLVPVKSSNNVASKILKTFVDRKNLGDNTINMPPLSTIDPSGTRSKNMPIKDNALVMF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 TPSLVPVKSSNNVASKILKTFVDRKNLGDNTINMPPLSTIDPSGTRSKNMPIKDNALVMF 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 NGKVYLLAKKGTDVLPSQIDQQNSVSPDTPVRKDTLQTVSSSPVTEISREVVNIVLAKSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 NGKVYLLAKKGTDVLPSQIDQQNSVSPDTPVRKDTLQTVSSSPVTEISREVVNIVLAKSK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 SSQMETKSLSNTQLASMANLRAEKNKVEKPSPSTTNPHMNQSSNYLKQSKTLFTNPIFPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 SSQMETKSLSNTQLASMANLRAEKNKVEKPSPSTTNPHMNQSSNYLKQSKTLFTNPIFPV 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE2 GFSTGHNAPRKVTAVIYARKGSVLQSIEKISSSVDATTVTSQQCVFRDQEPKIHNEMAST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 GFSTGHNAPRKVTAVIYARKGSVLQSIEKISSSVDATTVTSQQCVFRDQEPKIHNEMAST 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE2 SDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 SDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSF 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE2 SSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIINGEANV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 SSLVKSGTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIINGEANV 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE2 TGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 TGSQLLSSILPTSDVSQHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFF 670 680 690 700 710 720 730 740 750 760 pF1KE2 NKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 NKNYTEDIFPVTPPELEETIRDEKIRRLKQVLREKEAALEEMRKKMHQK 730 740 750 760 >>CCDS41366.1 LRIF1 gene_id:55791|Hs108|chr1 (233 aa) initn: 1495 init1: 1495 opt: 1495 Z-score: 1372.2 bits: 262.9 E(32554): 4.1e-70 Smith-Waterman score: 1495; 100.0% identity (100.0% similar) in 233 aa overlap (537-769:1-233) 510 520 530 540 550 560 pF1KE2 IEKISSSVDATTVTSQQCVFRDQEPKIHNEMASTSDKGAQGRNDKKDSQGRSNKALHLKS :::::::::::::::::::::::::::::: CCDS41 MASTSDKGAQGRNDKKDSQGRSNKALHLKS 10 20 30 570 580 590 600 610 620 pF1KE2 DAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSFSSLVKSGTYKETEFMVKEGERKQQNF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 DAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSFSSLVKSGTYKETEFMVKEGERKQQNF 40 50 60 70 80 90 630 640 650 660 670 680 pF1KE2 DKKRKAKTNKKMDHIKKRKTENAYNAIINGEANVTGSQLLSSILPTSDVSQHNILTSHSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 DKKRKAKTNKKMDHIKKRKTENAYNAIINGEANVTGSQLLSSILPTSDVSQHNILTSHSK 100 110 120 130 140 150 690 700 710 720 730 740 pF1KE2 TRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDEKIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 TRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDEKIR 160 170 180 190 200 210 750 760 pF1KE2 RLKQVLREKEAALEEMRKKMHQK ::::::::::::::::::::::: CCDS41 RLKQVLREKEAALEEMRKKMHQK 220 230 769 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 18:09:38 2016 done: Mon Nov 7 18:09:39 2016 Total Scan time: 3.950 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]