FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3296, 774 aa 1>>>pF1KE3296 774 - 774 aa - 774 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.2269+/-0.00101; mu= 7.9537+/- 0.061 mean_var=167.4030+/-34.655, 0's: 0 Z-trim(110.1): 28 B-trim: 0 in 0/51 Lambda= 0.099127 statistics sampled from 11361 (11377) to 11361 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.349), width: 16 Scan time: 4.380 The best scores are: opt bits E(32554) CCDS32486.1 RFWD3 gene_id:55159|Hs108|chr16 ( 774) 5202 756.5 3.6e-218 >>CCDS32486.1 RFWD3 gene_id:55159|Hs108|chr16 (774 aa) initn: 5202 init1: 5202 opt: 5202 Z-score: 4030.3 bits: 756.5 E(32554): 3.6e-218 Smith-Waterman score: 5202; 99.7% identity (100.0% similar) in 774 aa overlap (1-774:1-774) 10 20 30 40 50 60 pF1KE3 MAHEAMEYDVQVQLNHAEQQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MAHEAMEYDVQVQLNHAEQQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 ISSQATPPLLQPAPQLSVDLTEVEVLGEDNVENINPRTSEQHRQGSDGNHTIPASSLHSM :::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::: CCDS32 ISSQATPPLLQPAPQLSVDLTEVEVLGEDTVENINPRTSEQHRQGSDGNHTIPASSLHSM 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 TNFISGLQRLHGMLEFLRPSSSNHSVGPMRTRRRVSASRRARAGGSQRTDSARLRAPLDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 TNFISGLQRLHGMLEFLRPSSSNHSVGPMRTRRRVSASRRARAGGSQRTDSARLRAPLDA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 YFQVSRTQPDLPATTYDSETRNPVSEELQVSSSSDSDSDSSAEYGGVVDQAEESGAVILE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 YFQVSRTQPDLPATTYDSETRNPVSEELQVSSSSDSDSDSSAEYGGVVDQAEESGAVILE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 EQLAGVSAEQEVTCIDGGKTLPKQPSPQKSEPLLPSASMDEEEGDTCTICLEQWTNAGDH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 EQLAGVSAEQEVTCIDGGKTLPKQPSPQKSEPLLPSASMDEEEGDTCTICLEQWTNAGDH 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 RLSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARHSDIVVLYARTLRALDTSEQERMKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 RLSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARHSDIVVLYARTLRALDTSEQERMKS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 SLLKEQMLRKQAELESAQCRLQLQVLTDKCTRLQRRVQDLQKLTSHQSQNLQQPRGSQAW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 SLLKEQMLRKQAELESAQCRLQLQVLTDKCTRLQRRVQDLQKLTSHQSQNLQQPRGSQAW 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 VLSCSPSSQGQHKHKYHFQKTFTVSQAGNCRIMAYCDALSCLVISQPSPQASFLPGFGVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 VLSCSPSSQGQHKHKYHFQKTFTVSQAGNCRIMAYCDALSCLVISQPSPQASFLPGFGVK 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 MLSTANMKSSQYIPMHGKQIRGLAFSSYLRGLLLSASLDNTIKLTSLETNTVVQTYNAGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MLSTANMKSSQYIPMHGKQIRGLAFSSYLRGLLLSASLDNTIKLTSLETNTVVQTYNAGR 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE3 PVWSCCWCLDEANYIYAGLANGSVLVYDVRNTSSHVQELVAQKARCPLVSLSYMPRAASA :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: CCDS32 PVWSCCWCLDEANYIYAGLANGSILVYDVRNTSSHVQELVAQKARCPLVSLSYMPRAASA 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE3 AFPYGGVLAGTLEDASFWEQKMDFSHWPHVLPLEPGGCIDFQTENSSRHCLVTYRPDKNH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 AFPYGGVLAGTLEDASFWEQKMDFSHWPHVLPLEPGGCIDFQTENSSRHCLVTYRPDKNH 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE3 TTIRSVLMEMSYRLDDTGNPICSCQPVHTFFGGPTCKLLTKNAIFQSPENDGNILVCTGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 TTIRSVLMEMSYRLDDTGNPICSCQPVHTFFGGPTCKLLTKNAIFQSPENDGNILVCTGD 670 680 690 700 710 720 730 740 750 760 770 pF1KE3 EAANSALLWDAASGSLLQDLQTDQPVLDICPFEVNRNSYLATLTEKMVHIYKWE :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 EAANSALLWDAASGSLLQDLQTDQPVLDICPFEVNRNSYLATLTEKMVHIYKWE 730 740 750 760 770 774 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 18:05:35 2016 done: Mon Nov 7 18:05:35 2016 Total Scan time: 4.380 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]