FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7933, 367 aa 1>>>pF1KB7933 367 - 367 aa - 367 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 11.5093+/-0.000925; mu= -7.3358+/- 0.056 mean_var=463.5371+/-96.846, 0's: 0 Z-trim(118.5): 86 B-trim: 1169 in 1/53 Lambda= 0.059571 statistics sampled from 19388 (19481) to 19388 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.84), E-opt: 0.2 (0.598), width: 16 Scan time: 3.860 The best scores are: opt bits E(32554) CCDS3607.1 1 gene_id:4825|Hs108|chr4 ( 367) 2428 222.1 6.2e-58 CCDS7670.1 2 gene_id:84504|Hs108|chr10 ( 277) 964 96.1 3.8e-20 >>CCDS3607.1 1 gene_id:4825|Hs108|chr4 (367 aa) initn: 2428 init1: 2428 opt: 2428 Z-score: 1153.6 bits: 222.1 E(32554): 6.2e-58 Smith-Waterman score: 2428; 100.0% identity (100.0% similar) in 367 aa overlap (1-367:1-367) 10 20 30 40 50 60 pF1KB7 MLAVGAMEGTRQSAFLLSSPPLAALHSMAEMKTPLYPAAYPPLPAGPPSSSSSSSSSSSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 MLAVGAMEGTRQSAFLLSSPPLAALHSMAEMKTPLYPAAYPPLPAGPPSSSSSSSSSSSP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 SPPLGTHNPGGLKPPATGGLSSLGSPPQQLSAATPHGINDILSRPSMPVASGAALPSASP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 SPPLGTHNPGGLKPPATGGLSSLGSPPQQLSAATPHGINDILSRPSMPVASGAALPSASP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 SGSSSSSSSSASASSASAAAAAAAAAAAAASSPAGLLAGLPRFSSLSPPPPPPGLYFSPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 SGSSSSSSSSASASSASAAAAAAAAAAAAASSPAGLLAGLPRFSSLSPPPPPPGLYFSPS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 AAAVAAVGRYPKPLAELPGRTPIFWPGVMQSPPWRDARLACTPHQGSILLDKDGKRKHTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 AAAVAAVGRYPKPLAELPGRTPIFWPGVMQSPPWRDARLACTPHQGSILLDKDGKRKHTR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB7 PTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKKHAAEMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 PTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKKHAAEMA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB7 TAKKKQDSETERLKGASENEEEDDDYNKPLDPNSDDEKITQLLKKHKSSSGGGGGLLLHA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS36 TAKKKQDSETERLKGASENEEEDDDYNKPLDPNSDDEKITQLLKKHKSSSGGGGGLLLHA 310 320 330 340 350 360 pF1KB7 SEPESSS ::::::: CCDS36 SEPESSS >>CCDS7670.1 2 gene_id:84504|Hs108|chr10 (277 aa) initn: 1059 init1: 694 opt: 964 Z-score: 475.1 bits: 96.1 E(32554): 3.8e-20 Smith-Waterman score: 1070; 55.1% identity (67.4% similar) in 356 aa overlap (7-355:1-274) 10 20 30 40 50 60 pF1KB7 MLAVGAMEGTRQSAFLLSSPPLAALHSMAEMKTPLYPAAYPPLPAGPPSSSSSSSSSSSP :. .: .::.::: ::::::.:::::: :.: : CCDS76 MDTNRPGAFVLSSAPLAALHNMAEMKTSLFPYAL-------------------- 10 20 30 70 80 90 100 110 120 pF1KB7 SPPLGTHNPGGLKPPATGGLSSLGSPPQQLSAATPHGINDILSRPSMPVASGAALPSASP ..:.:.: :: :::.. :: .:::::.:::.:: ::: CCDS76 ------QGPAGFKAPALGGLGA------QLPLGTPHGISDILGRPV-----GAA------ 40 50 60 70 130 140 150 160 170 180 pF1KB7 SGSSSSSSSSASASSASAAAAAAAAAAAAASSPAGLLAGLPRFSSLSPPPPPPGLYFSPS :. :::.::::...:. :.::.: CCDS76 -GG-------------------------------GLLGGLPRLNGLASSA---GVYFGP- 80 90 190 200 210 220 230 240 pF1KB7 AAAVAAVGRYPKPLAELPGRTPIFWPGVMQSPPWRDARLACTPHQGSILLDKDGKRKHTR ::::: : ::::::::::: :::::::.:. :::: ::: :..: :::::.::.: CCDS76 AAAVAR-G-YPKPLAELPGRPPIFWPGVVQGAPWRDPRLAGPAPAGGVL-DKDGKKKHSR 100 110 120 130 140 150 250 260 270 280 290 300 pF1KB7 PTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKKHAAEMA :::::::::::::::::::::::::::::::::::::::::::::::::::::.::.::: CCDS76 PTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKRHAVEMA 160 170 180 190 200 210 310 320 330 340 350 pF1KB7 TAKKKQDSETERLKGASENEEEDDDYNKPLDPNSDDEKITQLLKKHKSSS-------GGG .:::::::..:.:: .. . :.::.::.::::::::::::.:::::: :. ::: CCDS76 SAKKKQDSDAEKLKVGGSDAEDDDEYNRPLDPNSDDEKITRLLKKHKPSNLALVSPCGGG 220 230 240 250 260 270 360 pF1KB7 GGLLLHASEPESSS .: CCDS76 AGDAL 367 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 17:50:12 2016 done: Mon Nov 7 17:50:13 2016 Total Scan time: 3.860 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]