Result of FASTA (omim) for
pFN21AE4052
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4052, 232 aa
1>>>pF1KE4052 232 - 232 aa - 232 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2897+/-0.000282; mu= 11.9702+/- 0.018
mean_var=118.3064+/-24.031, 0's: 0 Z-trim(120.5): 13 B-trim: 1957 in 1/53
Lambda= 0.117915
statistics sampled from 35792 (35805) to 35792 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.42), width: 16
Scan time: 5.660
The best scores are: opt bits E(85289)
NP_919420 (OMIM: 612041,612042) probable E3 SUMO-p ( 232) 1605 283.0 3e-76
NP_001124506 (OMIM: 612041,612042) probable E3 SUM ( 297) 1318 234.2 1.8e-61
XP_011511746 (OMIM: 612041,612042) PREDICTED: prob ( 219) 1308 232.4 4.7e-61
XP_005272331 (OMIM: 612041,612042) PREDICTED: prob ( 272) 1308 232.5 5.5e-61
XP_016863531 (OMIM: 612041,612042) PREDICTED: prob ( 156) 941 169.9 2.3e-42
XP_011511741 (OMIM: 612041,612042) PREDICTED: prob ( 253) 877 159.2 6.1e-39
XP_016863528 (OMIM: 612041,612042) PREDICTED: prob ( 253) 877 159.2 6.1e-39
XP_016863529 (OMIM: 612041,612042) PREDICTED: prob ( 253) 877 159.2 6.1e-39
XP_011511745 (OMIM: 612041,612042) PREDICTED: prob ( 231) 814 148.4 9.6e-36
XP_016863530 (OMIM: 612041,612042) PREDICTED: prob ( 164) 614 114.3 1.3e-25
NP_001180247 (OMIM: 612041,612042) probable E3 SUM ( 273) 612 114.1 2.4e-25
XP_011511748 (OMIM: 612041,612042) PREDICTED: prob ( 184) 607 113.1 3.2e-25
XP_011511747 (OMIM: 612041,612042) PREDICTED: prob ( 209) 607 113.2 3.6e-25
>>NP_919420 (OMIM: 612041,612042) probable E3 SUMO-prote (232 aa)
initn: 1605 init1: 1605 opt: 1605 Z-score: 1489.9 bits: 283.0 E(85289): 3e-76
Smith-Waterman score: 1605; 100.0% identity (100.0% similar) in 232 aa overlap (1-232:1-232)
10 20 30 40 50 60
pF1KE4 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 DIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 DIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 SMRSSQQTAFSTIKSSVSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 SMRSSQQTAFSTIKSSVSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARI
130 140 150 160 170 180
190 200 210 220 230
pF1KE4 SMISPPQDGRMAPCARRVCHFQRFTMFLHRRLSSLAAPPSVQFWKARGTHQL
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_919 SMISPPQDGRMAPCARRVCHFQRFTMFLHRRLSSLAAPPSVQFWKARGTHQL
190 200 210 220 230
>>NP_001124506 (OMIM: 612041,612042) probable E3 SUMO-pr (297 aa)
initn: 1336 init1: 1318 opt: 1318 Z-score: 1224.6 bits: 234.2 E(85289): 1.8e-61
Smith-Waterman score: 1318; 99.5% identity (100.0% similar) in 193 aa overlap (1-193:1-193)
10 20 30 40 50 60
pF1KE4 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 DIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 SMRSSQQTAFSTIKSSVSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SMRSSQQTAFSTIKSSVSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARI
130 140 150 160 170 180
190 200 210 220 230
pF1KE4 SMISPPQDGRMAPCARRVCHFQRFTMFLHRRLSSLAAPPSVQFWKARGTHQL
:::::::::::.:
NP_001 SMISPPQDGRMGPHLTASFCFIPWLTLSKPPVPGECVISRGSPCFCIDVCPHWLLLLAFS
190 200 210 220 230 240
>>XP_011511746 (OMIM: 612041,612042) PREDICTED: probable (219 aa)
initn: 1308 init1: 1308 opt: 1308 Z-score: 1217.2 bits: 232.4 E(85289): 4.7e-61
Smith-Waterman score: 1308; 100.0% identity (100.0% similar) in 191 aa overlap (1-191:1-191)
10 20 30 40 50 60
pF1KE4 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 DIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 SMRSSQQTAFSTIKSSVSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SMRSSQQTAFSTIKSSVSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARI
130 140 150 160 170 180
190 200 210 220 230
pF1KE4 SMISPPQDGRMAPCARRVCHFQRFTMFLHRRLSSLAAPPSVQFWKARGTHQL
:::::::::::
XP_011 SMISPPQDGRMGSVSSLGPEHPGLTTSQRSMGKPLSVKF
190 200 210
>>XP_005272331 (OMIM: 612041,612042) PREDICTED: probable (272 aa)
initn: 1308 init1: 1308 opt: 1308 Z-score: 1215.9 bits: 232.5 E(85289): 5.5e-61
Smith-Waterman score: 1308; 100.0% identity (100.0% similar) in 191 aa overlap (1-191:1-191)
10 20 30 40 50 60
pF1KE4 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 DIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 SMRSSQQTAFSTIKSSVSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SMRSSQQTAFSTIKSSVSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARI
130 140 150 160 170 180
190 200 210 220 230
pF1KE4 SMISPPQDGRMAPCARRVCHFQRFTMFLHRRLSSLAAPPSVQFWKARGTHQL
:::::::::::
XP_005 SMISPPQDGRMGSVSSLGPEHPGLTTSQRSMGKPLRIPPLQIPYKGPPLTPTPQLPGRAG
190 200 210 220 230 240
>>XP_016863531 (OMIM: 612041,612042) PREDICTED: probable (156 aa)
initn: 941 init1: 941 opt: 941 Z-score: 881.7 bits: 169.9 E(85289): 2.3e-42
Smith-Waterman score: 941; 100.0% identity (100.0% similar) in 138 aa overlap (1-138:1-138)
10 20 30 40 50 60
pF1KE4 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 DIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 SMRSSQQTAFSTIKSSVSTKPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARI
::::::::::::::::::
XP_016 SMRSSQQTAFSTIKSSVSNWSRWKLISLLLRLENLR
130 140 150
>>XP_011511741 (OMIM: 612041,612042) PREDICTED: probable (253 aa)
initn: 891 init1: 873 opt: 877 Z-score: 820.1 bits: 159.2 E(85289): 6.1e-39
Smith-Waterman score: 877; 97.1% identity (99.3% similar) in 140 aa overlap (54-193:10-149)
30 40 50 60 70 80
pF1KE4 NCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDADIQAFFMSIDSLCKKYSRETSQI
.:. ::::::::::::::::::::::::::
XP_011 MMTSDAAKAFSHATDADIQAFFMSIDSLCKKYSRETSQI
10 20 30
90 100 110 120 130 140
pF1KE4 LEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQSMRSSQQTAFSTIKSSVSTKPHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQSMRSSQQTAFSTIKSSVSTKPHG
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE4 CLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARISMISPPQDGRMAPCARRVCHFQR
::::::::::::::::::::::::::::::::::::::::::::::::.:
XP_011 CLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARISMISPPQDGRMGPHLTASFCFIP
100 110 120 130 140 150
210 220 230
pF1KE4 FTMFLHRRLSSLAAPPSVQFWKARGTHQL
XP_011 WLTLSKPPVPGECVISRGSPCFCIDVCPHWLLLLAFSSGRHGELTNSKTLPIYAEVQRAV
160 170 180 190 200 210
>>XP_016863528 (OMIM: 612041,612042) PREDICTED: probable (253 aa)
initn: 891 init1: 873 opt: 877 Z-score: 820.1 bits: 159.2 E(85289): 6.1e-39
Smith-Waterman score: 877; 97.1% identity (99.3% similar) in 140 aa overlap (54-193:10-149)
30 40 50 60 70 80
pF1KE4 NCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDADIQAFFMSIDSLCKKYSRETSQI
.:. ::::::::::::::::::::::::::
XP_016 MMTSDAAKAFSHATDADIQAFFMSIDSLCKKYSRETSQI
10 20 30
90 100 110 120 130 140
pF1KE4 LEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQSMRSSQQTAFSTIKSSVSTKPHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQSMRSSQQTAFSTIKSSVSTKPHG
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE4 CLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARISMISPPQDGRMAPCARRVCHFQR
::::::::::::::::::::::::::::::::::::::::::::::::.:
XP_016 CLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARISMISPPQDGRMGPHLTASFCFIP
100 110 120 130 140 150
210 220 230
pF1KE4 FTMFLHRRLSSLAAPPSVQFWKARGTHQL
XP_016 WLTLSKPPVPGECVISRGSPCFCIDVCPHWLLLLAFSSGRHGELTNSKTLPIYAEVQRAV
160 170 180 190 200 210
>>XP_016863529 (OMIM: 612041,612042) PREDICTED: probable (253 aa)
initn: 891 init1: 873 opt: 877 Z-score: 820.1 bits: 159.2 E(85289): 6.1e-39
Smith-Waterman score: 877; 97.1% identity (99.3% similar) in 140 aa overlap (54-193:10-149)
30 40 50 60 70 80
pF1KE4 NCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDADIQAFFMSIDSLCKKYSRETSQI
.:. ::::::::::::::::::::::::::
XP_016 MMTSDAAKAFSHATDADIQAFFMSIDSLCKKYSRETSQI
10 20 30
90 100 110 120 130 140
pF1KE4 LEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQSMRSSQQTAFSTIKSSVSTKPHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQSMRSSQQTAFSTIKSSVSTKPHG
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE4 CLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARISMISPPQDGRMAPCARRVCHFQR
::::::::::::::::::::::::::::::::::::::::::::::::.:
XP_016 CLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARISMISPPQDGRMGPHLTASFCFIP
100 110 120 130 140 150
210 220 230
pF1KE4 FTMFLHRRLSSLAAPPSVQFWKARGTHQL
XP_016 WLTLSKPPVPGECVISRGSPCFCIDVCPHWLLLLAFSSGRHGELTNSKTLPIYAEVQRAV
160 170 180 190 200 210
>>XP_011511745 (OMIM: 612041,612042) PREDICTED: probable (231 aa)
initn: 848 init1: 814 opt: 814 Z-score: 762.7 bits: 148.4 E(85289): 9.6e-36
Smith-Waterman score: 814; 99.2% identity (100.0% similar) in 127 aa overlap (67-193:1-127)
40 50 60 70 80 90
pF1KE4 GKKNECLICKAPCRTVLLSKHTDADIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLA
::::::::::::::::::::::::::::::
XP_011 MSIDSLCKKYSRETSQILEFQEKHRKRLLA
10 20 30
100 110 120 130 140 150
pF1KE4 FYREKISRLEESLRKSVLQIEQLQSMRSSQQTAFSTIKSSVSTKPHGCLLPPHSSAPDRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FYREKISRLEESLRKSVLQIEQLQSMRSSQQTAFSTIKSSVSTKPHGCLLPPHSSAPDRL
40 50 60 70 80 90
160 170 180 190 200 210
pF1KE4 ESMEVDLSPSPIRKSEIAAGPARISMISPPQDGRMAPCARRVCHFQRFTMFLHRRLSSLA
:::::::::::::::::::::::::::::::::::.:
XP_011 ESMEVDLSPSPIRKSEIAAGPARISMISPPQDGRMGPHLTASFCFIPWLTLSKPPVPGEC
100 110 120 130 140 150
220 230
pF1KE4 APPSVQFWKARGTHQL
XP_011 VISRGSPCFCIDVCPHWLLLLAFSSGRHGELTNSKTLPIYAEVQRAVLFPFQQAEGTLDT
160 170 180 190 200 210
>>XP_016863530 (OMIM: 612041,612042) PREDICTED: probable (164 aa)
initn: 630 init1: 614 opt: 614 Z-score: 580.8 bits: 114.3 E(85289): 1.3e-25
Smith-Waterman score: 614; 98.8% identity (100.0% similar) in 84 aa overlap (1-84:1-84)
10 20 30 40 50 60
pF1KE4 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MANWVFCNRCFQPPHRTSCFSLTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 DIQAFFMSIDSLCKKYSRETSQILEFQEKHRKRLLAFYREKISRLEESLRKSVLQIEQLQ
::::::::::::::::::::::.:
XP_016 DIQAFFMSIDSLCKKYSRETSQLLTQVIVLCAHPHMLSGTSGLLGCHRTAAVHQSGGKLP
70 80 90 100 110 120
232 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 17:44:01 2016 done: Mon Nov 7 17:44:02 2016
Total Scan time: 5.660 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]