FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3169, 399 aa 1>>>pF1KE3169 399 - 399 aa - 399 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 14.2777+/-0.00109; mu= -20.3153+/- 0.066 mean_var=661.5009+/-134.230, 0's: 0 Z-trim(118.5): 46 B-trim: 61 in 1/54 Lambda= 0.049867 statistics sampled from 19467 (19511) to 19467 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.829), E-opt: 0.2 (0.599), width: 16 Scan time: 3.360 The best scores are: opt bits E(32554) CCDS33055.1 MYPOP gene_id:339344|Hs108|chr19 ( 399) 2800 215.6 6.5e-56 >>CCDS33055.1 MYPOP gene_id:339344|Hs108|chr19 (399 aa) initn: 2800 init1: 2800 opt: 2800 Z-score: 1117.3 bits: 215.6 E(32554): 6.5e-56 Smith-Waterman score: 2800; 100.0% identity (100.0% similar) in 399 aa overlap (1-399:1-399) 10 20 30 40 50 60 pF1KE3 MASAAAGEAEETTRLRKPRFSFEENQILIREVRAHYPQLYGAQSRRVSVAERRRVWDGIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MASAAAGEAEETTRLRKPRFSFEENQILIREVRAHYPQLYGAQSRRVSVAERRRVWDGIA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 AKINGITSWKRTGQEVQKRWNDFKRRTKEKLARVPHSTQGAGPAAEDAFSAEEETIFAIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 AKINGITSWKRTGQEVQKRWNDFKRRTKEKLARVPHSTQGAGPAAEDAFSAEEETIFAIL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 GPGVAAPGAGAGAEEPPAAPSSQPPPPSACPQRYVLSEDRREDRRADTSAHSKAGSSSPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 GPGVAAPGAGAGAEEPPAAPSSQPPPPSACPQRYVLSEDRREDRRADTSAHSKAGSSSPE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 PWARPSCTPQEGGCPRPKERESPPPSALQPVQLPRLALSPPPPAPPLPPPPPLAQVAPSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 PWARPSCTPQEGGCPRPKERESPPPSALQPVQLPRLALSPPPPAPPLPPPPPLAQVAPSP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 PSPPPPPRPPPTLSASDPSLDFLRAQQETANAIRELAGTLRQGLAKLSEALSALLPLLPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 PSPPPPPRPPPTLSASDPSLDFLRAQQETANAIRELAGTLRQGLAKLSEALSALLPLLPG 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 TPVDSLPPPLPPPPPPPPPPRPVLPPPAPKVEITPEPVSVVAAVVDGAVVAARGVIIAPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 TPVDSLPPPLPPPPPPPPPPRPVLPPPAPKVEITPEPVSVVAAVVDGAVVAARGVIIAPR 310 320 330 340 350 360 370 380 390 pF1KE3 SEEGAPRPPPAPLPPHDSPPHKRRKGFPTRKRRGRWKSP ::::::::::::::::::::::::::::::::::::::: CCDS33 SEEGAPRPPPAPLPPHDSPPHKRRKGFPTRKRRGRWKSP 370 380 390 399 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 17:30:12 2016 done: Mon Nov 7 17:30:13 2016 Total Scan time: 3.360 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]