FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6106, 601 aa 1>>>pF1KB6106 601 - 601 aa - 601 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.4514+/-0.000794; mu= 9.9277+/- 0.048 mean_var=111.7758+/-22.279, 0's: 0 Z-trim(110.9): 5 B-trim: 0 in 0/54 Lambda= 0.121311 statistics sampled from 11941 (11943) to 11941 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.367), width: 16 Scan time: 3.060 The best scores are: opt bits E(32554) CCDS47751.2 NUB1 gene_id:51667|Hs108|chr7 ( 625) 3942 700.6 1.6e-201 CCDS59089.1 NUB1 gene_id:51667|Hs108|chr7 ( 639) 2982 532.6 6e-151 >>CCDS47751.2 NUB1 gene_id:51667|Hs108|chr7 (625 aa) initn: 3942 init1: 3942 opt: 3942 Z-score: 3731.6 bits: 700.6 E(32554): 1.6e-201 Smith-Waterman score: 3942; 100.0% identity (100.0% similar) in 601 aa overlap (1-601:25-625) 10 20 30 pF1KB6 MAQKKYLQAKLTQFLREDRIQLWKPPYTDENKKVGL :::::::::::::::::::::::::::::::::::: CCDS47 MKTNGGRCRIRALCWSRREWRGAGMAQKKYLQAKLTQFLREDRIQLWKPPYTDENKKVGL 10 20 30 40 50 60 40 50 60 70 80 90 pF1KB6 ALKDLAKQYSDRLECCENEVEKVIEEIRCKAIERGTGNDNYRTTGIATIEVFLPPRLKKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 ALKDLAKQYSDRLECCENEVEKVIEEIRCKAIERGTGNDNYRTTGIATIEVFLPPRLKKD 70 80 90 100 110 120 100 110 120 130 140 150 pF1KB6 RKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 RKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVL 130 140 150 160 170 180 160 170 180 190 200 210 pF1KB6 ELKQSEEDARKNFQLEEEEQNEAKLKEKQIQRTKRGLEILAKRAAETVVDPEMTPYLDIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 ELKQSEEDARKNFQLEEEEQNEAKLKEKQIQRTKRGLEILAKRAAETVVDPEMTPYLDIA 190 200 210 220 230 240 220 230 240 250 260 270 pF1KB6 NQTGRSIRIPPSERKALMLAMGYHEKGRAFLKRKEYGIALPCLLDADKYFCECCRELLDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 NQTGRSIRIPPSERKALMLAMGYHEKGRAFLKRKEYGIALPCLLDADKYFCECCRELLDT 250 260 270 280 290 300 280 290 300 310 320 330 pF1KB6 VDNYAVLQLDIVWCYFRLEQLECLDDAEKKLNLAQKCFKNCYGENHQRLVHIKGNCGKEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 VDNYAVLQLDIVWCYFRLEQLECLDDAEKKLNLAQKCFKNCYGENHQRLVHIKGNCGKEK 310 320 330 340 350 360 340 350 360 370 380 390 pF1KB6 VLFLRLYLLQGIRNYHSGNDVEAYEYLNKARQLFKELYIDPSKVDNLLQLGFTAQEARLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 VLFLRLYLLQGIRNYHSGNDVEAYEYLNKARQLFKELYIDPSKVDNLLQLGFTAQEARLG 370 380 390 400 410 420 400 410 420 430 440 450 pF1KB6 LRACDGNVDHAATHITNRREELAQIRKEEKEKKRRRLENIRFLKGMGYSTHAAQQILLSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 LRACDGNVDHAATHITNRREELAQIRKEEKEKKRRRLENIRFLKGMGYSTHAAQQILLSN 430 440 450 460 470 480 460 470 480 490 500 510 pF1KB6 PQMWWLNDSNPETDNRQESPSQENIDRLVYMGFDALVAEAALRVFRGNVQLAAQTLAHNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 PQMWWLNDSNPETDNRQESPSQENIDRLVYMGFDALVAEAALRVFRGNVQLAAQTLAHNG 490 500 510 520 530 540 520 530 540 550 560 570 pF1KB6 GSLPPELPLSPEDSLSPPATSPSDSAGTSSASTDEDMETEAVNEILEDIPEHEEDYLDST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 GSLPPELPLSPEDSLSPPATSPSDSAGTSSASTDEDMETEAVNEILEDIPEHEEDYLDST 550 560 570 580 590 600 580 590 600 pF1KB6 LEDEEIIIAEYLSYVENRKSATKKN ::::::::::::::::::::::::: CCDS47 LEDEEIIIAEYLSYVENRKSATKKN 610 620 >>CCDS59089.1 NUB1 gene_id:51667|Hs108|chr7 (639 aa) initn: 3026 init1: 2979 opt: 2982 Z-score: 2823.4 bits: 532.6 E(32554): 6e-151 Smith-Waterman score: 3904; 97.7% identity (97.7% similar) in 615 aa overlap (1-601:25-639) 10 20 30 pF1KB6 MAQKKYLQAKLTQFLREDRIQLWKPPYTDENKKVGL :::::::::::::::::::::::::::::::::::: CCDS59 MKTNGGRCRIRALCWSRREWRGAGMAQKKYLQAKLTQFLREDRIQLWKPPYTDENKKVGL 10 20 30 40 50 60 40 50 60 70 80 90 pF1KB6 ALKDLAKQYSDRLECCENEVEKVIEEIRCKAIERGTGNDNYRTTGIATIEVFLPPRLKKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 ALKDLAKQYSDRLECCENEVEKVIEEIRCKAIERGTGNDNYRTTGIATIEVFLPPRLKKD 70 80 90 100 110 120 100 110 120 130 140 150 pF1KB6 RKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 RKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVL 130 140 150 160 170 180 160 170 180 190 200 210 pF1KB6 ELKQSEEDARKNFQLEEEEQNEAKLKEKQIQRTKRGLEILAKRAAETVVDPEMTPYLDIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 ELKQSEEDARKNFQLEEEEQNEAKLKEKQIQRTKRGLEILAKRAAETVVDPEMTPYLDIA 190 200 210 220 230 240 220 230 240 250 260 270 pF1KB6 NQTGRSIRIPPSERKALMLAMGYHEKGRAFLKRKEYGIALPCLLDADKYFCECCRELLDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 NQTGRSIRIPPSERKALMLAMGYHEKGRAFLKRKEYGIALPCLLDADKYFCECCRELLDT 250 260 270 280 290 300 280 290 300 310 320 330 pF1KB6 VDNYAVLQLDIVWCYFRLEQLECLDDAEKKLNLAQKCFKNCYGENHQRLVHIKGNCGKEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 VDNYAVLQLDIVWCYFRLEQLECLDDAEKKLNLAQKCFKNCYGENHQRLVHIKGNCGKEK 310 320 330 340 350 360 340 350 360 370 380 390 pF1KB6 VLFLRLYLLQGIRNYHSGNDVEAYEYLNKARQLFKELYIDPSKVDNLLQLGFTAQEARLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 VLFLRLYLLQGIRNYHSGNDVEAYEYLNKARQLFKELYIDPSKVDNLLQLGFTAQEARLG 370 380 390 400 410 420 400 410 420 430 440 450 pF1KB6 LRACDGNVDHAATHITNRREELAQIRKEEKEKKRRRLENIRFLKGMGYSTHAAQQ----- ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 LRACDGNVDHAATHITNRREELAQIRKEEKEKKRRRLENIRFLKGMGYSTHAAQQVLHAA 430 440 450 460 470 480 460 470 480 490 500 pF1KB6 ---------ILLSNPQMWWLNDSNPETDNRQESPSQENIDRLVYMGFDALVAEAALRVFR ::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 SGNLDEALKILLSNPQMWWLNDSNPETDNRQESPSQENIDRLVYMGFDALVAEAALRVFR 490 500 510 520 530 540 510 520 530 540 550 560 pF1KB6 GNVQLAAQTLAHNGGSLPPELPLSPEDSLSPPATSPSDSAGTSSASTDEDMETEAVNEIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 GNVQLAAQTLAHNGGSLPPELPLSPEDSLSPPATSPSDSAGTSSASTDEDMETEAVNEIL 550 560 570 580 590 600 570 580 590 600 pF1KB6 EDIPEHEEDYLDSTLEDEEIIIAEYLSYVENRKSATKKN ::::::::::::::::::::::::::::::::::::::: CCDS59 EDIPEHEEDYLDSTLEDEEIIIAEYLSYVENRKSATKKN 610 620 630 601 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 17:29:31 2016 done: Mon Nov 7 17:29:31 2016 Total Scan time: 3.060 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]